RetrogeneDB ID: | retro_chof_2546 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_84742:4806..5184(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000000711 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSCHOG00000009661 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 71.54 % |
Parental protein coverage: | 93.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KSTGGKAPRKQLATKAARKSAPSTGG-VKKPHRYRP-GTVALREIRRYQKSTELLIRKLPFQRLVREIAQ |
K.T.GKAP.KQLA.K.A.KSAPST.G..KKP..Y.P..T.ALREI..YQKSTELLI.K..FQRLVREI.Q | |
Retrocopy | KFTSGKAPCKQLANKVAQKSAPSTAG<MKKPQCYSP<RTIALREIHLYQKSTELLIWKMFFQRLVREITQ |
Parental | DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI-MPKDIQLARRIRGERA |
D.KTDLRFQ..A.G.L.EASE.YL..L.EDTNLCAI..KRVTI.MPKDIQLAR.I.G.RA | |
Retrocopy | DIKTDLRFQNEATGVLYEASEVYLMSLSEDTNLCAIQVKRVTI<MPKDIQLARWIQGDRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |