RetrogeneDB ID: | retro_lafr_410 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_15:46937119..46937508(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3A | ||
Ensembl ID: | ENSLAFG00000021624 | ||
Aliases: | None | ||
Description: | Histone H3 [Source:UniProtKB/TrEMBL;Acc:G3T157] |
Percent Identity: | 74.81 % |
Parental protein coverage: | 95.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TARKSTGGKAP-RKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI |
TA..S.G.KAP.R.Q.ATKAA..SAPSTGGV.KPHR.RPGT.ALREI.RYQ.S.EL...KLPFQ.LVR.. | |
Retrocopy | TACRSIGSKAP<REQQATKAACQSAPSTGGVEKPHRSRPGTAALREIKRYQTSAELVMCKLPFQCLVRGM |
Parental | AQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
AQDFKTD.R.QS.AIGA..EASEAYLVGLFED..LCAIHA.RVT.MPKD.QLA.RIRGE.A | |
Retrocopy | AQDFKTDVRSQSTAIGAFPEASEAYLVGLFEDSKLCAIHANRVTVMPKDTQLAHRIRGEGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |