RetrogeneDB ID: | retro_chof_2584 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_87768:4019..4334(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM230 | ||
Ensembl ID: | ENSCHOG00000010231 | ||
Aliases: | None | ||
Description: | transmembrane protein 230 [Source:HGNC Symbol;Acc:15876] |
Percent Identity: | 79.05 % |
Parental protein coverage: | 68.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MQPRRPWLPTVGELSARGLPGAGL---LCQLVMMPSRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKSP |
MQP.RPWLPT.G.LS..G.P.A.L...LCQL..MP..TNLATGIPSSKVKYSRLSS.D.GY.DLQFK.SP | |
Retrocopy | MQP*RPWLPTLGDLSVYGRPVAALQL*LCQLDVMPCHTNLATGIPSSKVKYSRLSSRDNGYTDLQFKRSP |
Parental | PKIPYKAIALAVVLFLIGAFLIIIGSLLLAGYISK |
PKIPYKAIALA.VLFLIGAFLIIIGS.LLAGYI.K | |
Retrocopy | PKIPYKAIALATVLFLIGAFLIIIGSFLLAGYINK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006063 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010231 | 12 retrocopies | |
Callithrix jacchus | ENSCJAG00000021275 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014992 | 1 retrocopy | |
Homo sapiens | ENSG00000089063 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000006412 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023089 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013258 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007719 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000001386 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010796 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000013221 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000019378 | 1 retrocopy |