Parental gene:

TMEM230, ENSCJAG00000021275

Aliases:None
Description:transmembrane protein 230 [Source:HGNC Symbol;Acc:15876]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:10866310..10880804(-)


>ENSCJAG00000021275
ATAAGACAGAGCCTTGCTCTGTCGCCCAGGCTGAAGTGCATTGGTGCAATCTTGGCTCACTGTAACATCCACCTCCTTGG
CAAGTCACTCAATTCTGCCTCAGCCTCCCCACCGTATCAGCGTGTTATGATGCCGTCCCGTACCAACTTGGCTACTGGAA
TCCCCAGTAGTAAAGTGAAATATTCAAGGCTCTCCAGCACAGACGATGGCTACATTGACCTTCAGTTTAAGAAAAGCCCT
CCAAAGATCCCTTATAAGGCCATTGCACTTGCCACTGTGCTGTTTTTGATTGGCGCCTTTCTCATTATTATAGGCTCCCT
CCTGCTCTCAGGCTACATCAGCAAAGGGGGGGCAGACCGGGCCGTTCCAGTCCTGATCATTGGCATTCTGGTGTTCCTAC
CCGGATTTTACCACCTGCGCATCGCTTACTATGCATCCAAAGGCTACCGCGGTTACTCCTATGATGACATTCCAGACTTT
GATGACTAG

Library Parental gene expression (RPM)
SRP051959_spleen 21 .70 RPM
SRP051959_skeletal_muscle 23 .06 RPM
SRP051959_lymph_node 21 .28 RPM
SRP051959_lung 21 .21 RPM
SRP051959_liver 27 .01 RPM
SRP051959_kidney 21 .25 RPM
SRP051959_heart 17 .38 RPM
SRP051959_colon 16 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006063 possible_ortholog 2 retrogenes
retro_btau_1079, retro_btau_147,
Choloepus hoffmanni ENSCHOG00000010231 ortholog_one2one 12 retrogenes
retro_chof_1228, retro_chof_1463, retro_chof_1812, retro_chof_2199, retro_chof_2210, retro_chof_2400, retro_chof_253, retro_chof_2584, retro_chof_2661, retro_chof_397, retro_chof_884, retro_chof_996,
Erinaceus europaeus ENSEEUG00000014992 ortholog_one2one 1 retrogene
retro_eeur_77,
Homo sapiens ENSG00000089063 ortholog_one2one 3 retrogenes
retro_hsap_4890, retro_hsap_550, retro_hsap_783,
Loxodonta africana ENSLAFG00000006412 ortholog_one2one 1 retrogene
retro_lafr_1033,
Myotis lucifugus ENSMLUG00000023089 possible_ortholog 2 retrogenes
retro_mluc_1504, retro_mluc_1759,
Macaca mulatta ENSMMUG00000013258 ortholog_one2one 4 retrogenes
retro_mmul_1187, retro_mmul_2386, retro_mmul_2626, retro_mmul_856,
Nomascus leucogenys ENSNLEG00000007719 ortholog_one2one 3 retrogenes
retro_nleu_1256, retro_nleu_199, retro_nleu_723,
Otolemur garnettii ENSOGAG00000001386 ortholog_one2one 2 retrogenes
retro_ogar_1700, retro_ogar_3108,
Pongo abelii ENSPPYG00000010796 ortholog_one2one 3 retrogenes
retro_pabe_3801, retro_pabe_507, retro_pabe_916,
Pan troglodytes ENSPTRG00000013221 ortholog_one2one 4 retrogenes
retro_ptro_3030, retro_ptro_3257, retro_ptro_3258, retro_ptro_413,
Ictidomys tridecemlineatus ENSSTOG00000019378 ortholog_one2many 1 retrogene
retro_itri_35,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3112 83.59 78.40
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2. retro_cjac_4206 63.03 69.75
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Download FASTA sequences of all ENSCJAG00000021275 retrocopies