RetrogeneDB ID: | retro_chof_996 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_182003:4131..4411(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM230 | ||
Ensembl ID: | ENSCHOG00000010231 | ||
Aliases: | None | ||
Description: | transmembrane protein 230 [Source:HGNC Symbol;Acc:15876] |
Percent Identity: | 82.29 % |
Parental protein coverage: | 62.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MQPRRPWLPTVGELSARGLPGAGLL-CQLVMMPSRTNLATGIPS-SKVKYSRLSSTDDGYIDLQFKKS-P |
MQP.RPWLPT.GELSA.G.PGA.L..CQL.MMPS.TNLATGIP..SKVKYSRLSSTDDGYIDLQFKKS.P | |
Retrocopy | MQPWRPWLPTMGELSAHGRPGAALCSCQLAMMPSCTNLATGIPE<SKVKYSRLSSTDDGYIDLQFKKS<P |
Parental | PKIPYKAIALAVVLFLIGAFLIIIGS |
PKIP.KAIALA..LFLIGAFLI.IG. | |
Retrocopy | PKIPCKAIALAIMLFLIGAFLINIGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006063 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010231 | 12 retrocopies | |
Callithrix jacchus | ENSCJAG00000021275 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014992 | 1 retrocopy | |
Homo sapiens | ENSG00000089063 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000006412 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000023089 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013258 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000007719 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000001386 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010796 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000013221 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000019378 | 1 retrocopy |