RetrogeneDB ID: | retro_chof_2607 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_89966:5385..5827(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSCHOG00000012360 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 62.99 % |
Parental protein coverage: | 73.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | LGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTVRCGSVLVRLIPAPRGTGIVSAP |
LGV.CSKEV.T.I.GAII.AKLSI.PV.....GNK..K.HT.PCKV.....S.LV.LI..PRGTGIVS.. | |
Retrocopy | LGVECSKEVGTTIHGAIIVAKLSIIPVCWD*CGNKVSKSHTFPCKVAGHWDSMLVCLIHVPRGTGIVSTS |
Parental | VPKKLLMM-AGIDDCYT-SARGCTA-TLGNFAKAT-FDAISKTYSYLTPDLWK-ETVFTKSPYQEFTDHL |
.PKK.L....GID.CY...AR.CTA.TLG...KAT..D.ISKT.SYL.P.L.K..T..TKS..QEFT.HL | |
Retrocopy | KPKKFLLV<GGIDHCYI<LARACTA<TLGKLPKAT<LDTISKTSSYLSPNLCK<KTLITKSLSQEFTLHL |
Parental | VKTHTRVSVQRTQA |
VKTHTRVS.QR.QA | |
Retrocopy | VKTHTRVSMQRIQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies |
retro_chof_1056, retro_chof_2398, retro_chof_2545, retro_chof_2607 , retro_chof_368, retro_chof_378, retro_chof_535, retro_chof_919, retro_chof_989,
|
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |