RetrogeneDB ID: | retro_sscr_293 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 12:19731147..19731700(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000017377 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000022859 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHT |
MPVQKQT.AG.RTRFKAFVAIGD..GHVGLG.KCS.EV.TAI.GAI.LAKLS..PV.RG.W..KI.KPHT | |
Retrocopy | MPVQKQTHAGHRTRFKAFVAIGDCKGHVGLGGKCSEEVTTAIQGAITLAKLSVIPVWRGSWWSKIRKPHT |
Parental | VPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYS |
..CKVTGRCGSV.V.L.PAPRGTG.VSAPVPKKL.MMA.IDDCYTSA..CTA.LGNFAKATFDA.SKT.. | |
Retrocopy | GSCKVTGRCGSVPVCLFPAPRGTGMVSAPVPKKLRMMARIDDCYTSASACTAALGNFAKATFDATSKTNG |
Parental | YLTPDLW-KETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
.LTPDLW.KETV.TKSPYQE.T..LVKT..RVS.QRTQAPAVATT | |
Retrocopy | CLTPDLW>KETVYTKSPYQESTNYLVKTRARVSAQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 0 .27 RPM |
SRP014902_testis | 0 .00 RPM | 0 .00 RPM |
SRP018288_heart | 0 .03 RPM | 0 .50 RPM |
SRP018288_kidney | 0 .00 RPM | 0 .49 RPM |
SRP018288_liver | 0 .00 RPM | 0 .32 RPM |
SRP018288_lung | 0 .00 RPM | 0 .31 RPM |
SRP018856_adipose | 0 .00 RPM | 0 .48 RPM |
SRP035408_brain | 0 .00 RPM | 0 .06 RPM |
SRP035408_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012360 | 9 retrocopies | |
Macropus eugenii | ENSMEUG00000004508 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000022859 | 8 retrocopies |
retro_sscr_280, retro_sscr_293 , retro_sscr_412, retro_sscr_486, retro_sscr_729, retro_sscr_803, retro_sscr_950, retro_sscr_951,
|