RetrogeneDB ID: | retro_chof_434 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_10816:2234..2506(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP3S2 | ||
Ensembl ID: | ENSCHOG00000003359 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 3, sigma 2 subunit [Source:HGNC Symbol;Acc:571] |
Percent Identity: | 80.43 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKR-DDNICNFLEGG-LIGGSDYKLIYRHYA |
MIQ.ILVFN...KP.LV.FYQ.FPEEIQQQI.RETFHLVL...DDNICNFLEGG.LIGGS.YK.IY...A | |
Retrocopy | MIQVILVFNSLRKPWLVCFYQHFPEEIQQQIFRETFHLVLSG<DDNICNFLEGGNLIGGSAYKVIYQYFA |
Parental | TLYFVFCVDSSESELGILDLIQ |
TLYFVFCVDSSES.LGILDLIQ | |
Retrocopy | TLYFVFCVDSSESKLGILDLIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001407 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003359 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000004247 | 1 retrocopy | |
Equus caballus | ENSECAG00000024044 | 1 retrocopy | |
Felis catus | ENSFCAG00000028122 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003421 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019522 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011780 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000030982 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000043141 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030174 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000015554 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008668 | 1 retrocopy |