RetrogeneDB ID: | retro_cjac_1053 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:84310624..84310851(-) | ||
Located in intron of: | ENSCJAG00000016514 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB1 | ||
Ensembl ID: | ENSCJAG00000018067 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa [Source:HGNC Symbol;Acc:7695] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 71.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FSVVLGVPVAVATGPAAIMVNFLQLLRDQWVVLFVPMGFVLGCYLDRKNDEKLTAFRNKSMLYKRELRPN |
FS..LG..VAVATGPAA.MVN.L...RD..V...VP..FV.GCY.DRKNDEKLTA.RNKSMLYKRELRP. | |
Retrocopy | FSIALGLRVAVATGPAATMVNLLHTVRDHRVHVLVPV*FVIGCYFDRKNDEKLTALRNKSMLYKRELRPI |
Parental | EE-YTWK |
E..YTWK | |
Retrocopy | ED<YTWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 9 .61 RPM |
SRP051959_heart | 0 .19 RPM | 23 .71 RPM |
SRP051959_kidney | 0 .11 RPM | 19 .21 RPM |
SRP051959_liver | 0 .13 RPM | 16 .57 RPM |
SRP051959_lung | 0 .20 RPM | 7 .58 RPM |
SRP051959_lymph_node | 0 .34 RPM | 9 .29 RPM |
SRP051959_skeletal_muscle | 0 .24 RPM | 33 .59 RPM |
SRP051959_spleen | 0 .50 RPM | 11 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018067 | 5 retrocopies | |
Homo sapiens | ENSG00000183648 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000022428 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017129 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012731 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006076 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006649 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015319 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008130 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000003502 | 2 retrocopies |