RetrogeneDB ID: | retro_cjac_219 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 7:96092671..96093436(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022998 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014547 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSRRRAWRFLLFQGSGDRWVSSPRGHFSPALRRGFFTTTTKEGYDRRPVDITPLEQRKLTFDTHALVQDL |
MSRR.AWRFLLFQGSGDRWVSSPRGHFSPALRR.FFT.TTKEGYDRRPVDITPLEQRKLTFDTHALVQDL | |
Retrocopy | MSRRWAWRFLLFQGSGDRWVSSPRGHFSPALRRDFFTITTKEGYDRRPVDITPLEQRKLTFDTHALVQDL |
Parental | ETHGFDKTQAETIVSALTTLSNVSLDTIYKEMVTQAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAE |
ETHGFDKTQAETIVSALTTLSNVSLDTIYKEM.TQAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAE | |
Retrocopy | ETHGFDKTQAETIVSALTTLSNVSLDTIYKEMITQAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAE |
Parental | NEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMEATTEFTKKDTQTKSIISETS |
NEKMKIELDQVKQQLMHETSRIRADNKL.INLERSRVTDMFTDQEKQLMEATTEFTKKDTQTKSIISETS | |
Retrocopy | NEKMKIELDQVKQQLMHETSRIRADNKLGINLERSRVTDMFTDQEKQLMEATTEFTKKDTQTKSIISETS |
Parental | NKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWK |
NKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWK | |
Retrocopy | NKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .16 RPM | 4 .13 RPM |
SRP051959_heart | 0 .25 RPM | 6 .52 RPM |
SRP051959_kidney | 0 .47 RPM | 6 .74 RPM |
SRP051959_liver | 0 .26 RPM | 5 .52 RPM |
SRP051959_lung | 0 .33 RPM | 6 .28 RPM |
SRP051959_lymph_node | 0 .27 RPM | 5 .00 RPM |
SRP051959_skeletal_muscle | 0 .35 RPM | 5 .39 RPM |
SRP051959_spleen | 0 .29 RPM | 6 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010541 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000014547 | 1 retrocopy |
retro_cjac_219 ,
|
Callithrix jacchus | ENSCJAG00000016050 | 1 retrocopy | |
Homo sapiens | ENSG00000137500 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020154 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016478 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004144 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003736 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004129 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005459 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009462 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014665 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011196 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003998 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007753 | 1 retrocopy |