RetrogeneDB ID: | retro_ttru_445 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2320:140696..141458(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC90B | ||
Ensembl ID: | ENSTTRG00000003998 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:28108] |
Percent Identity: | 87.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MWGRWLGRLLRS-EGSGACRVSTPRGRFSPALRRDFFTTATKEGYDTRPVDITPLEQRKLTFDTHALVQD |
MW..W..RLLRS.EGSG..RVST.RG..S.ALRRDFFT..TKEG...R.VDI.PL.QR.LTFDT.ALVQD | |
Retrocopy | MWSHWVWRLLRS>EGSGGLRVSTLRGPISSALRRDFFTATTKEG*YMR*VDIPPLGQR*LTFDTRALVQD |
Parental | LETHGFDKAQAETIVSALTILSNVSLDTIYKEMVTQAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRA |
LETHGFDKAQAETIVSALT.LSNVSL.TIYKEMVTQ.QQEITVQQLMAHLDSIRKDMV.LEKSEFANLRA | |
Retrocopy | LETHGFDKAQAETIVSALTTLSNVSLHTIYKEMVTQVQQEITVQQLMAHLDSIRKDMVDLEKSEFANLRA |
Parental | ENQKMKIELEQVKQQLINETSRIRADNKLDINLERSRVTDMFTDQEKKLMEATTEFTKNDTKTRGI-ISE |
ENQKMKIELEQVKQQLIN.TSRIRADNKLDINL.RSRVTDMFTDQEKKLMEATTEFTKN.TKTR.I.ISE | |
Retrocopy | ENQKMKIELEQVKQQLINKTSRIRADNKLDINLGRSRVTDMFTDQEKKLMEATTEFTKNETKTRVI<ISE |
Parental | TGNKIDTEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRLWK |
TGNKID.EIA.LKTLMESNKLETIRYLAASVFTCLAIALG.YRLWK | |
Retrocopy | TGNKIDAEIAYLKTLMESNKLETIRYLAASVFTCLAIALGLYRLWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010541 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000014547 | 1 retrocopy | |
Homo sapiens | ENSG00000137500 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020154 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016478 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004144 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003736 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004129 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005459 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009462 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014665 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011196 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003998 | 1 retrocopy |
retro_ttru_445 ,
|
Tursiops truncatus | ENSTTRG00000012874 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007753 | 1 retrocopy |