RetrogeneDB ID: | retro_cjac_2830 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 6:95253605..95254677(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000011633 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.32 % |
Parental protein coverage: | 63.91 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | LSFPIRRDD-GSWEVIEGYRAQHSQHRTPCKGGIRYSTD-VSVDEVKALASLMTYKCAVVDVPFGGAKAG |
L..P.RR...G......G..AQHSQHRTP.KGGIR.ST...SVDEVKALASLMTYKCAVV.VPFGGA.AG | |
Retrocopy | LPHPARRQLLGGHQRLGGHWAQHSQHRTPRKGGIRHSTA<LSVDEVKALASLMTYKCAVVNVPFGGANAG |
Parental | VKINPKNY-TDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHAC |
V.INPKNY.TDNEL.KITRRFTMELAKKGFIGPGIDVPAPDM.TGE.EMSWI.D.YASTIGH..INAHAC | |
Retrocopy | VEINPKNYYTDNELDKITRRFTMELAKKGFIGPGIDVPAPDMNTGEGEMSWIPDIYASTIGHCNINAHAC |
Parental | VTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVG-LHSMRYLHRF |
VTGKPISQGGIHGRISATG.GVFHG.ENFI.EASYMSILGMTPGFGDKTFVVQGFG..G......YLHRF | |
Retrocopy | VTGKPISQGGIHGRISATGHGVFHGVENFISEASYMSILGMTPGFGDKTFVVQGFG*CG<AYTL*YLHRF |
Parental | GAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYEGSILEADCDIL-IPAASEKQLTKSN |
GAKCIAVGESDGSI.N.DG.DPKELEDFKLQHGSILGFP.AKP.EGSILEADCDIL..P.ASEKQLTK.N | |
Retrocopy | GAKCIAVGESDGSI*NLDGFDPKELEDFKLQHGSILGFPRAKP*EGSILEADCDIL>LPDASEKQLTKYN |
Parental | APRVKAKIIAEGANGPTTPEADKIFLE-RNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERD |
.PRVKAKI..EGA.GPTTPEADKIFLE..NI.VIPDL.LN.GGVTVSYFEWLKNL.HVSYG.L.FKYE.D | |
Retrocopy | TPRVKAKITDEGASGPTTPEADKIFLE<GNITVIPDLHLNSGGVTVSYFEWLKNLSHVSYGHLIFKYEGD |
Parental | SNYHLLMSVQES |
SNYHLL.SVQES | |
Retrocopy | SNYHLLLSVQES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 42 .27 RPM |
SRP051959_heart | 0 .00 RPM | 65 .69 RPM |
SRP051959_kidney | 0 .07 RPM | 138 .46 RPM |
SRP051959_liver | 0 .06 RPM | 398 .97 RPM |
SRP051959_lung | 0 .02 RPM | 47 .74 RPM |
SRP051959_lymph_node | 0 .00 RPM | 49 .50 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 28 .45 RPM |
SRP051959_spleen | 0 .00 RPM | 54 .26 RPM |