RetrogeneDB ID: | retro_cjac_3119 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:26491780..26492293(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000034752 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000038151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.18 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSKRAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYL |
MSSKRAKTKTTKK.PQ..TS.VFAMFDQS.IQEFKEAFNMI.QNRDGFI.KEDLHDMLAS.GK.PT.EYL | |
Retrocopy | MSSKRAKTKTTKKLPQHTTSSVFAMFDQSWIQEFKEAFNMIHQNRDGFINKEDLHDMLASGGKKPTHEYL |
Parental | DAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEE-- |
DAMMNEAP.PINF..FLT.FGEKLNGTDPEDVIRN.FACFDEEAT.TIQEDYLRELLTT....F..E... | |
Retrocopy | DAMMNEAPAPINFAIFLTTFGEKLNGTDPEDVIRNVFACFDEEATCTIQEDYLRELLTTW---FMNEDCT |
Parental | VDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD |
VDELYREAP...K.NFNY.EFT.ILKHGAKDKDD | |
Retrocopy | VDELYREAPVERKENFNYMEFTCILKHGAKDKDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 39 .65 RPM |
SRP051959_heart | 0 .02 RPM | 103 .33 RPM |
SRP051959_kidney | 0 .00 RPM | 34 .83 RPM |
SRP051959_liver | 0 .02 RPM | 24 .82 RPM |
SRP051959_lung | 0 .02 RPM | 71 .27 RPM |
SRP051959_lymph_node | 0 .07 RPM | 56 .50 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 249 .24 RPM |
SRP051959_spleen | 0 .02 RPM | 57 .86 RPM |