RetrogeneDB ID: | retro_cjac_637 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:172796008..172796422(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MYL9 | ||
Ensembl ID: | ENSCJAG00000012890 | ||
Aliases: | None | ||
Description: | myosin, light chain 9, regulatory [Source:HGNC Symbol;Acc:15754] |
Percent Identity: | 89.86 % |
Parental protein coverage: | 80.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIR |
KEAFNMI.QNRDGF.DKEDLHDMLASLGKNPTDEYLEGMM.EAPGPINFTMFLTMFGEKLNGTDPEDVI. | |
Retrocopy | KEAFNMINQNRDGFSDKEDLHDMLASLGKNPTDEYLEGMMIEAPGPINFTMFLTMFGEKLNGTDPEDVIC |
Parental | NAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD |
NAFA.F.E.ASGFIHEDHL.ELLTTMGDRF.DEE.DEMYREAP.DKKGNFN.VEFTRI.KHGA.DKDD | |
Retrocopy | NAFARFAE*ASGFIHEDHLLELLTTMGDRFIDEEMDEMYREAPTDKKGNFNHVEFTRIIKHGAQDKDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 38 .61 RPM |
SRP051959_heart | 0 .28 RPM | 97 .23 RPM |
SRP051959_kidney | 0 .13 RPM | 15 .00 RPM |
SRP051959_liver | 0 .26 RPM | 3 .25 RPM |
SRP051959_lung | 0 .29 RPM | 21 .73 RPM |
SRP051959_lymph_node | 0 .41 RPM | 6 .21 RPM |
SRP051959_skeletal_muscle | 0 .22 RPM | 10 .70 RPM |
SRP051959_spleen | 0 .32 RPM | 15 .65 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008540 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000012890 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000038151 | 2 retrocopies | |
Equus caballus | ENSECAG00000007545 | 1 retrocopy | |
Homo sapiens | ENSG00000101335 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024477 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000207 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006109 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010971 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013458 | 1 retrocopy |