RetrogeneDB ID: | retro_cjac_3187 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 9:19625329..19625707(+) | ||
Located in intron of: | ENSCJAG00000005234 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S3 | ||
Ensembl ID: | ENSCJAG00000012352 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 3 subunit [Source:HGNC Symbol;Acc:18971] |
Percent Identity: | 68.25 % |
Parental protein coverage: | 81.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKITREIVQIILSRGHRTSSFIDWKELKLVYKRYASLYFCCAVDNQDNELLTLEIVHRYVELLDKYFGNV |
KKITRE.VQ..L.......SF..W..L..VYKRYASLYFCCA...QDNEL.TLEI.H.YVELLDKYFG.V | |
Retrocopy | KKITRELVQTVLALKPKICSFLEWRDLNIVYKRYASLYFCCAIEDQDNELITLEIIHHYVELLDKYFGSV |
Parental | CELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDMLQETLEEYMNKPTF |
CELDIIFNFEK.YFILDEF..GGE.QETSKK...KAIE..D.LQE...EY.N.P.. | |
Retrocopy | CELDIIFNFEKDYFILDEFFLGGEVQETSKKNVLKAIEQADLLQEPRHEYFNVPVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 2 .00 RPM |
SRP051959_heart | 0 .04 RPM | 0 .16 RPM |
SRP051959_kidney | 0 .02 RPM | 4 .75 RPM |
SRP051959_liver | 0 .04 RPM | 1 .10 RPM |
SRP051959_lung | 0 .03 RPM | 0 .41 RPM |
SRP051959_lymph_node | 0 .05 RPM | 0 .14 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .04 RPM |
SRP051959_spleen | 0 .08 RPM | 0 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011939 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005786 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012352 | 2 retrocopies |
retro_cjac_3187 , retro_cjac_3903,
|
Macropus eugenii | ENSMEUG00000016580 | 11 retrocopies | |
Microcebus murinus | ENSMICG00000014406 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021198 | 1 retrocopy | |
Mus musculus | ENSMUSG00000054702 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000013358 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012979 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010973 | 1 retrocopy |