RetrogeneDB ID: | retro_mmus_487 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:131632508..131632969(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000095841 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ap1s3 | ||
Ensembl ID: | ENSMUSG00000054702 | ||
Aliases: | Ap1s3, 1190009B22, Jr2, [s]3A | ||
Description: | adaptor-related protein complex AP-1, sigma 3 [Source:MGI Symbol;Acc:MGI:1891304] |
Percent Identity: | 97.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MIHFILLFSRQGKLRLQKWYTTLPDKERKK-ITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYASLYFCC |
MIHFILLFSRQGKL.LQKWYTTLPDKERKK.ITRDIIQTVLSRG.RTSSFIDWKELKLVYKRYASLYFCC | |
Retrocopy | MIHFILLFSRQGKLQLQKWYTTLPDKERKK<ITRDIIQTVLSRGRRTSSFIDWKELKLVYKRYASLYFCC |
Parental | AIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSD |
AIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSD | |
Retrocopy | AIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSD |
Parental | MLQETMEEYMNKPTF |
MLQETMEEYMNKP.F | |
Retrocopy | MLQETMEEYMNKPAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 1 .75 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .87 RPM |
SRP007412_heart | 0 .00 RPM | 0 .34 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .43 RPM |
SRP007412_liver | 0 .00 RPM | 0 .71 RPM |
SRP007412_testis | 0 .00 RPM | 0 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011939 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000012352 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000016580 | 11 retrocopies | |
Microcebus murinus | ENSMICG00000014406 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021198 | 1 retrocopy | |
Mus musculus | ENSMUSG00000008036 | 1 retrocopy | |
Mus musculus | ENSMUSG00000054702 | 3 retrocopies |
retro_mmus_2202, retro_mmus_2799, retro_mmus_487 ,
|
Ochotona princeps | ENSOPRG00000013358 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012979 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010973 | 1 retrocopy |