RetrogeneDB ID: | retro_cjac_4067 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:54229725..54231168(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000007299 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBQLN1 | ||
Ensembl ID: | ENSCJAG00000003609 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.55 % |
Parental protein coverage: | 83.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAESGESGGPPGSQDSAAGAEGAGASAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFK |
MAE.GES.GPP......A.A.G.....AAA.AEPKI.KVTVKTPKEKEEFAVPENSSVQQFKE.ISKRFK | |
Retrocopy | MAENGESSGPPRPSRGPAAAQGS----AAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFK |
Parental | SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTTGSNVTTSSAPNSNSTSG |
S.TDQLVLIFAGKILKDQDTL.QHGIHDGLTVHLVIK.QNRPQ....Q..N..G.N.T..S.P.SNST.. | |
Retrocopy | SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQTTQPSNAAGTNTTSASTPRSNSTPI |
Parental | SATSNPFALGGLGGLAGLSSLGLNTTNFSELQSQMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIM |
S..SNPF.LG.LGGLAGLSSLGL..TNFSELQSQMQ.QL...PEMM.QIMENPFVQSMLSNPDLMRQLIM | |
Retrocopy | STNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIM |
Parental | ANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQ |
ANPQMQQLIQRNPEISH.LNNPDIMRQTLE.ARNPAMMQEMMRNQD.ALSNLESIPGGYNALRRMYTDIQ | |
Retrocopy | ANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQ |
Parental | EPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQTSQSSSASSGTVSTVGGTTGSAA |
EPML.AAQEQFGGNPFAS..S..SSGEG.QPSRTENRDPLPNPWAP.....SSA...T....G...G... | |
Retrocopy | EPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSS |
Parental | SGTAGQSTTMPNLVPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN |
S...G......N.V....AS.F.TPGMQSLLQQITENPQL.QNMLSAPYMRSMMQSLSQNPDLAAQMMLN | |
Retrocopy | SNATGNTVAAANYV----ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLN |
Parental | NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLG |
.PLF..NPQLQEQMR.QLP.FLQQMQNPDTLSAMSNPRAMQAL.QIQQGLQTLATEAPGLIP.FTPG.G | |
Retrocopy | SPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 2 .33 RPM | 51 .85 RPM |
SRP051959_heart | 3 .60 RPM | 40 .76 RPM |
SRP051959_kidney | 3 .17 RPM | 56 .02 RPM |
SRP051959_liver | 5 .50 RPM | 58 .94 RPM |
SRP051959_lung | 3 .37 RPM | 49 .50 RPM |
SRP051959_lymph_node | 3 .61 RPM | 49 .02 RPM |
SRP051959_skeletal_muscle | 4 .28 RPM | 50 .60 RPM |
SRP051959_spleen | 3 .11 RPM | 49 .62 RPM |