RetrogeneDB ID: | retro_cjac_4215 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:109557405..109558441(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000033188 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PA2G4 | ||
Ensembl ID: | ENSCJAG00000011811 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.92 % |
Parental protein coverage: | 88.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VLSLCEKGDAMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHV |
.LSLCEKGDAMIMEETGKIFKKEKEMKKGIAFPTSISVNNCV.HFSPLKSDQDYILKEGDLVKIDLGVHV | |
Retrocopy | LLSLCEKGDAMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVRHFSPLKSDQDYILKEGDLVKIDLGVHV |
Parental | DGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEG |
DGFIANVAHTFVVD.AQ.TQVTGRKADVIKA.HLCAEAAL.LVKPGNQNTQVTEAWNKVAHSFNCTP.EG | |
Retrocopy | DGFIANVAHTFVVDIAQVTQVTGRKADVIKATHLCAEAALQLVKPGNQNTQVTEAWNKVAHSFNCTPVEG |
Parental | MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE-KAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSK |
MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE.K.EFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSK | |
Retrocopy | MLSHQLKQHVIDGEKTIIQNPTDQQKKDHE<KVEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSK |
Parental | QYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTV |
QYGLK.KTS.AFFSEVERRFDAMPFTLRAFEDEKKARMGVVEC.KHELLQPFN.LYEKEGEFVAQFKFTV | |
Retrocopy | QYGLKIKTSCAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECIKHELLQPFNILYEKEGEFVAQFKFTV |
Parental | LLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSASRKTQKK-KKKKASKTAENATSGETLEVNEA |
LLM.NGPMRITSGPFEPD......E...A.L.....S.......KK.KKKKASKTAENATS.ETLE.NEA | |
Retrocopy | LLMSNGPMRITSGPFEPDMEVQDAELK-AHLQS---SASQKTQKKK<KKKKASKTAENATSEETLEENEA |
Parental | GD |
GD | |
Retrocopy | GD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .07 RPM | 22 .96 RPM |
SRP051959_heart | 0 .04 RPM | 19 .68 RPM |
SRP051959_kidney | 0 .07 RPM | 21 .39 RPM |
SRP051959_liver | 0 .04 RPM | 19 .82 RPM |
SRP051959_lung | 0 .05 RPM | 23 .21 RPM |
SRP051959_lymph_node | 0 .02 RPM | 23 .97 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 32 .32 RPM |
SRP051959_spleen | 0 .02 RPM | 20 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007181 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011811 | 2 retrocopies |
retro_cjac_4214, retro_cjac_4215 ,
|
Homo sapiens | ENSG00000170515 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000005076 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000022666 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000009523 | 1 retrocopy |