Parental gene:

PA2G4, ENSSSCG00000022666

Aliases:None
Description:proliferation-associated 2G4, 38kDa [Source:HGNC Symbol;Acc:8550]
Organism:Pig (Sus scrofa)
Coordinates:5:22893079..22897807(-)


>ENSSSCG00000022666
ATGTCGGGCGAGGACGAGCAACAGGAGCAGACTATCGCCGAGGACCTGGTCGTGACCAAGTATAAGATGGGGGGCGACAT
CGCCAACCGGGTACTTCGGTCTTTGGTGGAAGCTTCCTGTTCAGGTGTGTCGGTACTGAGCCTGTGCGAGAAAGGGGATG
CCATGATAATGGAAGAGACAGGGAAAATTTTCAAGAAAGAAAAAGAAATGAAGAAAGGTATTGCCTTTCCCACCAGCATT
TCAGTAAATAACTGTGTATGTCACTTCTCCCCTTTGAAGAGCGACCAGGACTATATTCTCAAGGAAGGTGACTTGGTAAA
AATTGACCTTGGGGTCCACGTGGATGGCTTCATCGCTAATGTGGCTCACACTTTTGTGGTTGATGTAGCTCTGGGAACCC
AAGTAACAGGGCGGAAAGCAGATGTCATTAAGGCAGCTCACCTTTGTGCTGAGGCTGCCCTACGCCTTGTTAAACCTGGA
AACCAGGTAAGCTGTTTTAGTCCAATTCCAAAGGCTGATAGAGCCAGGGGTGCATGA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .83 RPM
SRP014902_testis 13 .58 RPM
SRP018856_adipose 40 .86 RPM
SRP018288_kidney 21 .87 RPM
SRP018288_lung 19 .96 RPM
SRP018288_liver 22 .07 RPM
SRP018288_heart 17 .10 RPM
SRP035408_liver 24 .48 RPM
SRP035408_brain 31 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007181 ortholog_one2many 2 retrogenes
retro_chof_1089, retro_chof_1847,
Callithrix jacchus ENSCJAG00000011811 possible_ortholog 2 retrogenes
retro_cjac_4214, retro_cjac_4215,
Homo sapiens ENSG00000170515 ortholog_one2one 6 retrogenes
retro_hsap_1930, retro_hsap_2413, retro_hsap_2868, retro_hsap_3646, retro_hsap_4191, retro_hsap_4895,
Macaca mulatta ENSMMUG00000002164 possible_ortholog 2 retrogenes
retro_mmul_1168, retro_mmul_2631,
Mus musculus ENSMUSG00000025364 possible_ortholog 1 retrogene
retro_mmus_2803,
Nomascus leucogenys ENSNLEG00000017544 ortholog_one2one 6 retrogenes
retro_nleu_1212, retro_nleu_1260, retro_nleu_163, retro_nleu_3024, retro_nleu_506, retro_nleu_612,
Oryctolagus cuniculus ENSOCUG00000017342 possible_ortholog 1 retrogene
retro_ocun_1733,
Pongo abelii ENSPPYG00000025851 ortholog_one2one 7 retrogenes
retro_pabe_1595, retro_pabe_1778, retro_pabe_2375, retro_pabe_2869, retro_pabe_2993, retro_pabe_3430, retro_pabe_3807,
Pan troglodytes ENSPTRG00000005076 possible_ortholog 6 retrogenes
retro_ptro_1289, retro_ptro_1389, retro_ptro_1940, retro_ptro_2471, retro_ptro_2846, retro_ptro_3263,
Sus scrofa ENSSSCG00000000377 within_species_paralog 1 retrogene
retro_sscr_338,
Tarsius syrichta ENSTSYG00000006777 possible_ortholog 1 retrogene
retro_tsyr_746,
Vicugna pacos ENSVPAG00000009523 possible_ortholog 1 retrogene
retro_vpac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_337 76.79 62.92
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2. retro_sscr_1143 81.36 65.73
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Download FASTA sequences of all ENSSSCG00000022666 retrocopies