Parental gene: | ENSPTRG00000005076 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:33256685..33285828(-) |
>ENSPTRG00000005076
ATGTGTAGGAGCCGGAGCAGGAGCCGGAGCCCACGGCCACGCGGAGATAGCGCCTACCATTCCCAGCGCCACAGTCTGCT
TACTCCTGTTACCCCACTCTCCCCACCAGGGTTAGAGGAAGAGGATGTCAACGGTTATGTCATGCCAGATACACACCTGA
AAGGGGTACTTCGGTCCTTGGTGGAAGCATCTAGCTCAGGTGTGTCGGTACTGAGCCTGTGTGAGAAAGGTGATGCCATG
ATTATGGAAGAAACAGGGAAAATCTTCAAGAAAGAAAAGGAAATGAAGAAAGGTATTGCTTTTCCCACCAGCATTTCGGT
AAATAACTGTGTATGTCACTTCTCCCCTTTGAAGAGCGACCAGGATTATATTCTCAAGGAAGGTGACTTGGTAAAAATTG
ACCTTGGGGTCCATGTGGATGGCTTCATCGCTAATGTAGCTCATACTTTTGTGGTTGATGTAGCTCAGGGGACCCAAGTA
ACAGGGAGGAAAGCAGATGTTATTAAGGCAGCTCACCTTTGTGCTGAAGCTGCCCTACGCCTGGTCAAACCTGGAAATCA
GAACACACAAGTGACAGAAGCCTGGAACAAAGTTGCCCACTCATTTAACTGCACGCCAATA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 39 .27 RPM |
| SRP007412_cerebellum | 26 .49 RPM |
| SRP007412_heart | 18 .10 RPM |
| SRP007412_kidney | 109 .58 RPM |
| SRP007412_liver | 75 .35 RPM |
| SRP007412_testis | 75 .03 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007181 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011811 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000170515 | possible_ortholog | 6 retrogenes | |
| Sus scrofa | ENSSSCG00000022666 | possible_ortholog | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000009523 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1289 | 85.53 | 73.43 | Please wait, loading  |
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| 2. | retro_ptro_1389 | 92.11 | 73.43 | Please wait, loading |
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| 3. | retro_ptro_1940 | 96.73 | 73.91 | Please wait, loading |
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| 4. | retro_ptro_2471 | 86.98 | 81.64 | Please wait, loading |
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| 5. | retro_ptro_2846 | 82.25 | 81.64 | Please wait, loading |
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| 6. | retro_ptro_3263 | 87.50 | 73.43 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000005076 retrocopies