RetrogeneDB ID: | retro_cpor_1124 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_49:1017899..1018444(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM106C | ||
Ensembl ID: | ENSCPOG00000008335 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.76 % |
Parental protein coverage: | 72.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MGSQHSASARLPSSKRKKDDREAFLADPEQEE-AIAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNE-LV |
MG.Q.S.SA...SSK.KK......LADPEQE..AIAQF.YVEF.GRDSITCLTCQGTGYIPTEQ..E.L. | |
Retrocopy | MGFQYSFSASPSSSKQKKYGKADILADPEQEK>AIAQFQYVEFIGRDSITCLTCQGTGYIPTEQFIE>LI |
Parental | ALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVVFFLFPHSVLVNDDGIKVVKVTFNKRDSLVIL-AITA |
.LIPHSDQR..PQRTKQYV.L.VLLCLL...LVVFFLFP.SVLVN.DGIKVVKVTFNK.DSLVIL..I.A | |
Retrocopy | SLIPHSDQRFYPQRTKQYVFLLVLLCLLSFSLVVFFLFPYSVLVNTDGIKVVKVTFNK*DSLVIL<CIMA |
Parental | TLKIRNSNFYPVSVTSLSSQVQYMNTVVGT-YMTTNVSLILPRSE |
TLKIRNSN.YPVSVTSLSSQV.YMNTVVGT...T.NVSLILP..E | |
Retrocopy | TLKIRNSNIYPVSVTSLSSQVPYMNTVVGT>HVTMNVSLILPQ*E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 62 .81 RPM |
SRP017611_liver | 0 .00 RPM | 26 .73 RPM |
SRP040447_lung | 0 .00 RPM | 25 .83 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 5 .09 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000008335 | 1 retrocopy |
retro_cpor_1124 ,
|
Equus caballus | ENSECAG00000020351 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010370 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017734 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014352 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000028397 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001184 | 1 retrocopy |