Parental gene:

TMEM106C, ENSSSCG00000028397

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:5:81398647..81404929(+)


>ENSSSCG00000028397
ATGGGGTCCCAGCATTCTGCCTTTGCTCACCCCCCTTCCTGCAAGAGAAGAAAAGCAGATGACAGAGAGAACTTCCTGGC
CGAACGGGAGCAGGAAGAAGCCATTGCTCAGTTCCCATATGTGGAGTTCACTGGGCGAGATAGCATCACCTGTCTCACTT
GCCAGGGGACAGGCTACATTCCAACAGAGCAAGTAAATGAGTTGGTGGCTTTGATCCCACACAGTGATCAGAGATTGCGT
CCTCAGAGAACTAAGCAATATGTCCTCTTGTCTGTCCTGCTCTGTCTCCTGGCATCTGGTTTGGTGGTTTTCTTCCTGTT
TCCACATTCGGTCCTCGTGGATGATGATGGCATCAAAGTGGTGAAAGTCACATTTAATAAGCAGGACTCCCTTGTAATCC
TCGCCATCACGGCCACCCTGAAAATCAGAAACTCCAACTTCTACCCAGTGGCGGTGACCAGCCTGTCCAGCCAGGTTCAG
TACATGAACACCGTGGTCGGGTCGTACTTGACCTCCAACGTCTCCCTCATTCCACCGCGGAGCGAGCACCTGGTGAATTT
TACTGCCAAGGCTGAGATGGGAGGACCATTTTCCTATGTGTATTTCTTCTGCACGTTGCCCGACATCCTGGTGCACAACA
TAGTGGTCTTCATGCGAGTCACAGCGAACGATTCCTACATTGGCCACATGACCCAGAGCTCCTTGGAGACACATCACTAT
GTGGATTGTGGAGCCAATTCCACGGCTGGCTCCAGCCACATGGTGCCAGGGCATGTGGGTGGG

Library Parental gene expression (RPM)
SRP014902_placenta 8 .49 RPM
SRP014902_testis 29 .99 RPM
SRP018288_heart 6 .89 RPM
SRP018288_kidney 27 .09 RPM
SRP018288_liver 5 .76 RPM
SRP018288_lung 11 .20 RPM
SRP018856_adipose 25 .46 RPM
SRP035408_brain 2 .25 RPM
SRP035408_liver 4 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000008335 ortholog_one2many 1 retrogene
retro_cpor_1124,
Equus caballus ENSECAG00000020351 ortholog_one2many 1 retrogene
retro_ecab_660,
Echinops telfairi ENSETEG00000010370 ortholog_one2many 1 retrogene
retro_etel_173,
Myotis lucifugus ENSMLUG00000017734 ortholog_one2many 1 retrogene
retro_mluc_1096,
Pteropus vampyrus ENSPVAG00000014352 ortholog_one2many 1 retrogene
retro_pvam_562,
Tarsius syrichta ENSTSYG00000001184 ortholog_many2many 1 retrogene
retro_tsyr_1263,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_473 86.80 95.40
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Download FASTA sequences of all ENSSSCG00000028397 retrocopies