Parental gene: | TMEM106C, ENSSSCG00000028397 |
| Aliases: | None |
| Description: | None |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 5:81398647..81404929(+) |
>ENSSSCG00000028397
ATGGGGTCCCAGCATTCTGCCTTTGCTCACCCCCCTTCCTGCAAGAGAAGAAAAGCAGATGACAGAGAGAACTTCCTGGC
CGAACGGGAGCAGGAAGAAGCCATTGCTCAGTTCCCATATGTGGAGTTCACTGGGCGAGATAGCATCACCTGTCTCACTT
GCCAGGGGACAGGCTACATTCCAACAGAGCAAGTAAATGAGTTGGTGGCTTTGATCCCACACAGTGATCAGAGATTGCGT
CCTCAGAGAACTAAGCAATATGTCCTCTTGTCTGTCCTGCTCTGTCTCCTGGCATCTGGTTTGGTGGTTTTCTTCCTGTT
TCCACATTCGGTCCTCGTGGATGATGATGGCATCAAAGTGGTGAAAGTCACATTTAATAAGCAGGACTCCCTTGTAATCC
TCGCCATCACGGCCACCCTGAAAATCAGAAACTCCAACTTCTACCCAGTGGCGGTGACCAGCCTGTCCAGCCAGGTTCAG
TACATGAACACCGTGGTCGGGTCGTACTTGACCTCCAACGTCTCCCTCATTCCACCGCGGAGCGAGCACCTGGTGAATTT
TACTGCCAAGGCTGAGATGGGAGGACCATTTTCCTATGTGTATTTCTTCTGCACGTTGCCCGACATCCTGGTGCACAACA
TAGTGGTCTTCATGCGAGTCACAGCGAACGATTCCTACATTGGCCACATGACCCAGAGCTCCTTGGAGACACATCACTAT
GTGGATTGTGGAGCCAATTCCACGGCTGGCTCCAGCCACATGGTGCCAGGGCATGTGGGTGGG
ATGGGGTCCCAGCATTCTGCCTTTGCTCACCCCCCTTCCTGCAAGAGAAGAAAAGCAGATGACAGAGAGAACTTCCTGGC
CGAACGGGAGCAGGAAGAAGCCATTGCTCAGTTCCCATATGTGGAGTTCACTGGGCGAGATAGCATCACCTGTCTCACTT
GCCAGGGGACAGGCTACATTCCAACAGAGCAAGTAAATGAGTTGGTGGCTTTGATCCCACACAGTGATCAGAGATTGCGT
CCTCAGAGAACTAAGCAATATGTCCTCTTGTCTGTCCTGCTCTGTCTCCTGGCATCTGGTTTGGTGGTTTTCTTCCTGTT
TCCACATTCGGTCCTCGTGGATGATGATGGCATCAAAGTGGTGAAAGTCACATTTAATAAGCAGGACTCCCTTGTAATCC
TCGCCATCACGGCCACCCTGAAAATCAGAAACTCCAACTTCTACCCAGTGGCGGTGACCAGCCTGTCCAGCCAGGTTCAG
TACATGAACACCGTGGTCGGGTCGTACTTGACCTCCAACGTCTCCCTCATTCCACCGCGGAGCGAGCACCTGGTGAATTT
TACTGCCAAGGCTGAGATGGGAGGACCATTTTCCTATGTGTATTTCTTCTGCACGTTGCCCGACATCCTGGTGCACAACA
TAGTGGTCTTCATGCGAGTCACAGCGAACGATTCCTACATTGGCCACATGACCCAGAGCTCCTTGGAGACACATCACTAT
GTGGATTGTGGAGCCAATTCCACGGCTGGCTCCAGCCACATGGTGCCAGGGCATGTGGGTGGG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 8 .49 RPM |
| SRP014902_testis | 29 .99 RPM |
| SRP018856_adipose | 25 .46 RPM |
| SRP018288_kidney | 27 .09 RPM |
| SRP018288_lung | 11 .20 RPM |
| SRP018288_liver | 5 .76 RPM |
| SRP018288_heart | 6 .89 RPM |
| SRP035408_liver | 4 .32 RPM |
| SRP035408_brain | 2 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000008335 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000020351 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000010370 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017734 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000014352 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000001184 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_473 | 86.80 | 95.40 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000028397 retrocopies