RetrogeneDB ID: | retro_cpor_1219 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_58:7559077..7559712(-) | ||
Located in intron of: | ENSCPOG00000004829 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL47 | ||
Ensembl ID: | ENSCPOG00000002312 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.64 % |
Parental protein coverage: | 85.71 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | VSLNLFSKNAPDVTSF-HQCKLLHTTLSRKGLEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLW |
VSL.L.SK.A..VTSF...C.LLHTTLSRKGLE..FDDPKNWGQEKV..GAAW.CQQLRNKS.EDLH.LW | |
Retrocopy | VSLRLSSKDASNVTSF<SHCRLLHTTLSRKGLE*YFDDPKNWGQEKVEPGAAWSCQQLRNKSDEDLHQLW |
Parental | YV-LLKERNMLLT-LEQEAKRQSLPMPSPERLE-KVVESMDALDKVVQEREDALRLLQTGQERARPGAWR |
....LKER.MLLT.LEQE..RQ.LPMPSPERLE.K...SMD.L......R.DALRLLQ..QE.ARP.A.. | |
Retrocopy | CE<VLKERSMLLT<LEQESRRQRLPMPSPERLE<KLADSMDTLK--MSSRKDALRLLQSAQEKARPSA-Q |
Parental | RDIFGRIIWHKFKQWPIPWYLNKRYNRKRFFAMPYVDHFVRLRLEKQARIKARKASLEKKKEKALQEKFP |
RDIF.RII.HKF.QW.I...LNKR.NRK.FFA..Y.DHFVRLR.E.QAR....K.S.EKK..K.L..KFP | |
Retrocopy | RDIFARII*HKFRQWSISQHLNKRCNRK*FFAVSYEDHFVRLRTERQARNEGVKKS*EKK*HKGLHKKFP |
Parental | HLAEAQKSSL |
HLAEAQK.SL | |
Retrocopy | HLAEAQKLSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .58 RPM | 6 .33 RPM |
SRP017611_kidney | 0 .10 RPM | 8 .58 RPM |
SRP017611_liver | 0 .13 RPM | 8 .57 RPM |
SRP040447_lung | 0 .00 RPM | 8 .10 RPM |
SRP040447_skeletal_muscle | 0 .07 RPM | 6 .99 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011380 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002312 | 2 retrocopies |
retro_cpor_1219 , retro_cpor_885,
|
Felis catus | ENSFCAG00000031548 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012649 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000021301 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000017214 | 1 retrocopy | |
Mus musculus | ENSMUSG00000037531 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000016957 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004284 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011639 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006898 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000008909 | 1 retrocopy |