RetrogeneDB ID:

retro_sara_721

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_29083:392..1142(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL47
Ensembl ID:ENSSARG00000006898
Aliases:None
Description:mitochondrial ribosomal protein L47 [Source:HGNC Symbol;Acc:16652]


Retrocopy-Parental alignment summary:






>retro_sara_721
GCTGCGGCCACCTTAGGGAATCTTTGCAGGAAGGTCTCTACTGCTCTAAAGGCTTCCAGGTCATTCATAAGTGCTCAGAG
CCCCGTGGGCACGGGTTTCAGGTTCTGTCTTGGCCTCCTGACAAAGAATCCAAGTGCTGCATCTTTTCACCAGTGTCAAT
TGTTTCATACCACATTGCCCAGGAAAGGACTGGAAGAATTTTTTGATGATCCAAAGAATTGAGGGGAAGAAAAAGTGAAA
TGTGGTGCTGCTTGGACCTGCCAGCAGTTATGGAACAAAAGTAATGAAGATTTACATAAGCTTCGGTACATCCTGCTGAA
GGACAGGAACAGGCTCCTGATGCTGGAGCAGGAGGCCACGCGCACGCAGAGGGTGCCCATGCCCAGTCCGGAGCGGCTCG
ACAAGGTCATAGAATCCATGGAAGCATTAGATAAAGTTGTCAAGGAAAGAGAAGATGCCATAAGACTTCTTCAGACAGGC
CAAGAAAATGCTAGACCCGGTGCTTGAAGGAGAGACATCTTTGGAAGAGTTATCTGGCACAAGTTTAAGCAGTGGCCTAT
ACCTTGGTACCTAAATAAAAAATATAAAAGGAAACGATACTTTTCATTGCCTTATGTGGATTGTTTTCTCAGACTGAAAC
TTGAGACACAAATGCACACCAGAGTAAAAAAGACAAGTTTAGAGAAAGAGAATCAGAAGTTTCTTCAGGAAAAGTTTCCT
CTCTCTGGAGCCTAGAAGTCAAGTGCAGCC

ORF - retro_sara_721 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.2 %
Parental protein coverage: 99.6 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAAASLGRLCRKVSTALKASRSFISAQXXXXXXXXFCLSLLTKNPNAASFHQCLLLHTTLPRNELEEFFD-
AAA.LG.LCRKVSTALKASRSFISAQ........FCL.LLTKNP.AASFHQC.L.HTTLPR..LEEFFD.
RetrocopyAAATLGNLCRKVSTALKASRSFISAQSPVGTGFRFCLGLLTKNPSAASFHQCQLFHTTLPRKGLEEFFDD
ParentalPKNWGEEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKDRNMLLMLDQEAKR-QRVPMPSPERLDKVIESM
PKN.GEEKVK.GAAWTCQQL.NKSNEDLHKL.Y.LLKDRN.LLML.QEA.R.QRVPMPSPERLDKVIESM
RetrocopyPKN*GEEKVKCGAAWTCQQLWNKSNEDLHKLRYILLKDRNRLLMLEQEATRTQRVPMPSPERLDKVIESM
ParentalEALDKVVQEREGAIRLLQTGRENTRPGAWRRNIF-RVIWHKFKQWPIPWYLNKKYKRKRFFSLPYVDHFL
EALDKVV.ERE.AIRLLQTG.EN.RPGA.RR.IF.RVIWHKFKQWPIPWYLNKKYKRKR.FSLPYVD.FL
RetrocopyEALDKVVKEREDAIRLLQTGQENARPGA*RRDIFGRVIWHKFKQWPIPWYLNKKYKRKRYFSLPYVDCFL
ParentalRLRLEKQMRTRARKTSLEKKNQKFLQEKFPLSGAQKSSAA
RL.LE.QM.TR..KTSLEK.NQKFLQEKFPLSGA.KSSAA
RetrocopyRLKLETQMHTRVKKTSLEKENQKFLQEKFPLSGA*KSSAA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_721 was not experimentally validated.

Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000113801 retrocopy
Cavia porcellus ENSCPOG000000023122 retrocopies
Felis catus ENSFCAG000000315481 retrocopy
Macropus eugenii ENSMEUG000000126492 retrocopies
Monodelphis domestica ENSMODG000000213013 retrocopies
Mustela putorius furoENSMPUG000000172141 retrocopy
Mus musculus ENSMUSG000000375313 retrocopies
Otolemur garnettii ENSOGAG000000169572 retrocopies
Pteropus vampyrus ENSPVAG000000042841 retrocopy
Rattus norvegicus ENSRNOG000000116392 retrocopies
Sorex araneus ENSSARG00000006898 2 retrocopies
retro_sara_269, retro_sara_721 ,
Tursiops truncatus ENSTTRG000000089091 retrocopy



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