RetrogeneDB ID: | retro_sara_721 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_29083:392..1142(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL47 | ||
Ensembl ID: | ENSSARG00000006898 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L47 [Source:HGNC Symbol;Acc:16652] |
Percent Identity: | 83.2 % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | AAASLGRLCRKVSTALKASRSFISAQXXXXXXXXFCLSLLTKNPNAASFHQCLLLHTTLPRNELEEFFD- |
AAA.LG.LCRKVSTALKASRSFISAQ........FCL.LLTKNP.AASFHQC.L.HTTLPR..LEEFFD. | |
Retrocopy | AAATLGNLCRKVSTALKASRSFISAQSPVGTGFRFCLGLLTKNPSAASFHQCQLFHTTLPRKGLEEFFDD |
Parental | PKNWGEEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKDRNMLLMLDQEAKR-QRVPMPSPERLDKVIESM |
PKN.GEEKVK.GAAWTCQQL.NKSNEDLHKL.Y.LLKDRN.LLML.QEA.R.QRVPMPSPERLDKVIESM | |
Retrocopy | PKN*GEEKVKCGAAWTCQQLWNKSNEDLHKLRYILLKDRNRLLMLEQEATRTQRVPMPSPERLDKVIESM |
Parental | EALDKVVQEREGAIRLLQTGRENTRPGAWRRNIF-RVIWHKFKQWPIPWYLNKKYKRKRFFSLPYVDHFL |
EALDKVV.ERE.AIRLLQTG.EN.RPGA.RR.IF.RVIWHKFKQWPIPWYLNKKYKRKR.FSLPYVD.FL | |
Retrocopy | EALDKVVKEREDAIRLLQTGQENARPGA*RRDIFGRVIWHKFKQWPIPWYLNKKYKRKRYFSLPYVDCFL |
Parental | RLRLEKQMRTRARKTSLEKKNQKFLQEKFPLSGAQKSSAA |
RL.LE.QM.TR..KTSLEK.NQKFLQEKFPLSGA.KSSAA | |
Retrocopy | RLKLETQMHTRVKKTSLEKENQKFLQEKFPLSGA*KSSAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011380 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002312 | 2 retrocopies | |
Felis catus | ENSFCAG00000031548 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012649 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000021301 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000017214 | 1 retrocopy | |
Mus musculus | ENSMUSG00000037531 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000016957 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004284 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011639 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006898 | 2 retrocopies |
retro_sara_269, retro_sara_721 ,
|
Tursiops truncatus | ENSTTRG00000008909 | 1 retrocopy |