RetrogeneDB ID: | retro_cpor_1359 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_71:5865260..5865849(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FRG1 | ||
Ensembl ID: | ENSCPOG00000022277 | ||
Aliases: | None | ||
Description: | FSHD region gene 1 [Source:HGNC Symbol;Acc:3954] |
Percent Identity: | 67.48 % |
Parental protein coverage: | 76.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 7 |
Parental | QLDIVGIWWTVANFGDISGTIAIEMDKGT-YIHALDNGL-FTLGAP-HKEVDEGPSPPEQFTAVKLSDSR |
QLD.V.IW..VAN...IS..IAIEM.K.T.Y..ALD..L.F.L..P.H.EVDEG.SP.E.FTA.K.SDS. | |
Retrocopy | QLDTVRIWQIVANSTNISAIIAIEMNKRT<YVQALDKCL<FKLATP<HREVDEGLSPLEKFTAAKVSDST |
Parental | IALKSGYG-KYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKS-KTAGE |
..LKSGYG.KYLGINSDGL.VG.SDA.....QWEP.FQDGKMALL.S.SCFIRCNE.G..EAK..KTA.E | |
Retrocopy | TSLKSGYG<KYLGINSDGLLVGHSDAFETSNQWEPEFQDGKMALLTSYSCFIRCNETGNKEAKK>KTARE |
Parental | EEMIKIRSCAERETKK-KDDIPEEDKG-NVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDG |
EEMIKIR..AERETKK.KDD.P.EDKG...KQC.IN.....Q.FQDH..KISKEDSKIL.K..KDG | |
Retrocopy | EEMIKIRT*AERETKK<KDDTP-EDKG<KAKQCGINHXXXXQNFQDHEFKISKEDSKIL*KLWKDG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .32 RPM |
SRP017611_liver | 0 .00 RPM | 18 .28 RPM |
SRP040447_lung | 0 .00 RPM | 20 .93 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 6 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000022277 | 7 retrocopies |
retro_cpor_1349, retro_cpor_1350, retro_cpor_1359 , retro_cpor_1361, retro_cpor_1362, retro_cpor_1363, retro_cpor_864,
|
Felis catus | ENSFCAG00000025737 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005749 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016671 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009846 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014491 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010985 | 2 retrocopies |