RetrogeneDB ID: | retro_cpor_1466 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:5048631..5049863(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000004978 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA2 | ||
Ensembl ID: | ENSCPOG00000006955 | ||
Aliases: | None | ||
Description: | Chaperone protein DnaJ [Source:UniProtKB/TrEMBL;Acc:H0V901] |
Percent Identity: | 95.87 % |
Parental protein coverage: | 99.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ANVADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGE |
...A..KLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVL.NPEKREL.DRYGE | |
Retrocopy | SQAATVKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLPNPEKRELCDRYGE |
Parental | QGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTT-KLQLSKN |
QGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLE.LYNGKTT.KLQ.SKN | |
Retrocopy | QGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEALYNGKTT<KLQVSKN |
Parental | VLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKV |
VLCSACSGQGGKSGAVQKCSACRGRG.R.MIRQLAPGMVQQMQ.VCSDCNGEGEVINEKDRCKKCEGKKV | |
Retrocopy | VLCSACSGQGGKSGAVQKCSACRGRGARVMIRQLAPGMVQQMQAVCSDCNGEGEVINEKDRCKKCEGKKV |
Parental | IKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALC |
IKE.KILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALC | |
Retrocopy | IKEAKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALC |
Parental | GFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSE |
GFQFTFK.LDGRQIV.KYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSE | |
Retrocopy | GFQFTFKQLDGRQIVLKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSE |
Parental | LEDLLPSRPEVPNIIGETEEVELQEFDSTRGSGGGQRREAYNDSSDEESSSHHGPGVQCAHQ |
LEDLLPSRPEVPNIIGETEEVELQEFDSTRGSGGGQRREAYNDSSD.ESSSHHGPGVQCAHQ | |
Retrocopy | LEDLLPSRPEVPNIIGETEEVELQEFDSTRGSGGGQRREAYNDSSDKESSSHHGPGVQCAHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 61 .89 RPM |
SRP017611_kidney | 0 .10 RPM | 59 .67 RPM |
SRP017611_liver | 0 .13 RPM | 32 .04 RPM |
SRP040447_lung | 0 .10 RPM | 45 .65 RPM |
SRP040447_skeletal_muscle | 0 .13 RPM | 56 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003757 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000000462 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006955 | 1 retrocopy |
retro_cpor_1466 ,
|
Dasypus novemcinctus | ENSDNOG00000013794 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002247 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004839 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016251 | 1 retrocopy |