RetrogeneDB ID: | retro_cpor_225 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_100:1871443..1872404(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCPOG00000000462 | ||
Aliases: | None | ||
Description: | Chaperone protein DnaJ [Source:UniProtKB/TrEMBL;Acc:H0UU01] |
Percent Identity: | 67.55 % |
Parental protein coverage: | 83.38 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 8 |
Parental | KKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDL-YNGATRKLA |
.KR.LYDKGG.QA.KEGGAGG...S....F.M.F.G.G....ER..KNVVHQL.V.LE.L..N.ATRKLA | |
Retrocopy | EKRGLYDKGG-QAMKEGGAGGSLESLVEVFGM-FSGRG----ERMQKNVVHQLLVALEGL<INDATRKLA |
Parental | LQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIG-PGMVQ-QIQSVCMECQ-GHGERISPKDRCK |
LQ.NV.CD.CE..GGKKG.VECCP...G.GMQIR..Q...P.MV..Q.QS...EC..GH.E.ISPK.R.K | |
Retrocopy | LQSNVTCDTCEDQGGKKGSVECCPKRQGAGMQIRARQKD<PEMVR<QTQSM*LECR<GHRECISPKRRHK |
Parental | SCNGRKIVREKKILEVHIDKGMKDG-QKITFHGEGDQEPGLEPGDIIIVLDQKDHAV-FTRRGEDLFMCM |
S.N.RKIVR.KKI.E.H..KGM..G.Q.IT.H.EGDQEPG.EPGD.I.V.DQK..A..F.R.G.DL..C. | |
Retrocopy | SFNRRKIVRGKKIEEAHTGKGMENG<QEITLHDEGDQEPGMEPGDVITVSDQKEQAA<FYR*G-DLALCT |
Parental | DIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGM-PIYRRPYEKGRLIIEFKVNFPEN |
D.QLVEALCGFQKPISTLDN.TI.ITSHPGQIVK.GDIKCVLNE.M..IY.RPYEK......FKVNFPEN | |
Retrocopy | DTQLVEALCGFQKPISTLDN*TIIITSHPGQIVKQGDIKCVLNEAM<AIYCRPYEKHFVSSKFKVNFPEN |
Parental | GFLSPDKLSLLEKLLP-ERKEVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPR |
GFLSP.KLSLLEKLLP..RKE.EETDEM.QVEL..F...QER..H.NGEAYE.DEHHPR | |
Retrocopy | GFLSPNKLSLLEKLLP<VRKE-EETDEMAQVELIAFCSSQERWHHHNGEAYENDEHHPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 73 .68 RPM |
SRP017611_kidney | 0 .00 RPM | 68 .05 RPM |
SRP017611_liver | 0 .00 RPM | 126 .62 RPM |
SRP040447_lung | 0 .08 RPM | 135 .06 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 46 .66 RPM |