RetrogeneDB ID: | retro_cpor_1523 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_93:81844..82128(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1G1 | ||
Ensembl ID: | ENSCPOG00000000763 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 [Source:HGNC Symbol;Acc:864] |
Percent Identity: | 56.7 % |
Parental protein coverage: | 81.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALG-SHGSCSSEVEK |
GIQ.LLQA.K.AA...S.A...KN.RL.Q..E.AQAEIEQ..LQREKE..AKEAA..G...G...S.... | |
Retrocopy | GIQLLLQAKKWAAQEGSKAHRQKNQRLTQT-EAAQAEIEQCHLQREKESRAKEAATVG<TPGQSHSSEAE |
Parental | ETQEKMAVLQHYFQQNREE-VLDNLLA |
.TQ..MAVLQ...QQNR...VL.N.LA | |
Retrocopy | ATQSTMAVLQTHVQQNRKK*VLGNRLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 20 .41 RPM |
SRP017611_liver | 0 .00 RPM | 21 .15 RPM |
SRP040447_lung | 0 .00 RPM | 28 .85 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 20 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020461 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000000763 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000008083 | 15 retrocopies | |
Dipodomys ordii | ENSDORG00000014850 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000013437 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008657 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000004899 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019574 | 1 retrocopy | |
Mus musculus | ENSMUSG00000039105 | 5 retrocopies |