RetrogeneDB ID: | retro_dnov_1173 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_15823:52795..53147(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1G1 | ||
Ensembl ID: | ENSDNOG00000008083 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 [Source:HGNC Symbol;Acc:864] |
Percent Identity: | 84.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MASQSQ-GIQQLLQAEKRAAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSHGSC |
MAS.SQ.GIQQLLQ.EKR.AEK.S.A.K.KN.RLKQAK..AQAEIEQY.LQREKEFKAKEA.AL.SHGSC | |
Retrocopy | MAS*SQ<GIQQLLQVEKRTAEKASKALKQKNWRLKQAKAAAQAEIEQYCLQREKEFKAKEAVALASHGSC |
Parental | S-TEVEKETQEKMTILQNYFQQNRDEVLDNLLAFVCDIRPEIHENYRING |
..TEVEKETQEK.TILQNYF.QNRDEVLDNLLAFVCDI.PEIHENYRING | |
Retrocopy | T<TEVEKETQEKITILQNYF*QNRDEVLDNLLAFVCDI*PEIHENYRING |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 80 .70 RPM |
SRP012922_cerebellum | 0 .00 RPM | 119 .05 RPM |
SRP012922_heart | 0 .00 RPM | 59 .86 RPM |
SRP012922_kidney | 0 .00 RPM | 150 .31 RPM |
SRP012922_liver | 0 .00 RPM | 54 .03 RPM |
SRP012922_lung | 0 .15 RPM | 142 .95 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 70 .10 RPM |
SRP012922_spleen | 0 .11 RPM | 144 .68 RPM |