RetrogeneDB ID: | retro_cpor_297 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_12:13136304..13136678(-) | ||
Located in intron of: | ENSCPOG00000006465 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPD3 | ||
Ensembl ID: | ENSCPOG00000012304 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein D3 polypeptide 18kDa [Source:HGNC Symbol;Acc:11160] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SIGVPIKVLHEAEGHIVTCETNTGEVY-RGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRF |
..GVPIKVLH.AEG.IV.CET..GEVY...KL.EA.D.MNCQMS.ITV.Y.DG.VAQLEQ.YI.G.KI.F | |
Retrocopy | AFGVPIKVLHAAEGYIVICETSNGEVY<LEKLVEAGDHMNCQMSIITVRYIDG*VAQLEQAYIHGGKICF |
Parental | LILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGNIFQKRR |
LILPDMLK.APMLKSMKNKNQGSGAGRGKAAILKAQV.A.GRGRG.GRG.IFQK.R | |
Retrocopy | LILPDMLKYAPMLKSMKNKNQGSGAGRGKAAILKAQVTAGGRGRGSGRGSIFQKQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 39 .15 RPM |
SRP017611_liver | 0 .00 RPM | 30 .60 RPM |
SRP040447_lung | 0 .00 RPM | 32 .11 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 44 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013864 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012304 | 1 retrocopy |
retro_cpor_297 ,
|
Dasypus novemcinctus | ENSDNOG00000018004 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005801 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012708 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000050410 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025674 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007649 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006022 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000241 | 2 retrocopies |