RetrogeneDB ID: | retro_cpor_338 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_13:20741584..20741900(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAGOH | ||
Ensembl ID: | ENSCPOG00000011511 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.85 % |
Parental protein coverage: | 72.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MESDFYLRYYVGHKGKF-GHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAY-VHKSVMEELKRIIDDSE |
.ESDFYL.YYVGHKGK..GHE.LEFEF..DGKLRY.N.SNYK.DV..RKEA...H.SVMEELKR.I.DSE | |
Retrocopy | LESDFYLHYYVGHKGKL<GHELLEFEF*SDGKLRYTNDSNYKTDVTTRKEAV<AHGSVMEELKRVIADSE |
Parental | ITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGS |
.TKED.ALWPPPDR.GRQE.E...GDEHISFTTSKIGS | |
Retrocopy | VTKEDGALWPPPDRAGRQEPEVFTGDEHISFTTSKIGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .54 RPM |
SRP017611_liver | 0 .00 RPM | 7 .57 RPM |
SRP040447_lung | 0 .08 RPM | 11 .12 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 4 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000004538 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011511 | 1 retrocopy |
retro_cpor_338 ,
|
Homo sapiens | ENSG00000162385 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007594 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000006406 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000002444 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017987 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000001880 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000013328 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000009020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001335 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000753 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012778 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001253 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000011611 | 17 retrocopies |