RetrogeneDB ID: | retro_cpor_712 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_25:1280759..1281244(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C9ORF78 | ||
Ensembl ID: | ENSCPOG00000009285 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.25 % |
Parental protein coverage: | 57.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LKKRKGIVEHEEQKVKPRNAEDCLYELPESIRVASAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTED |
LK.RK.I.EHE.QK.K......CL.ELPE.I...SA.....MLSNQ.LSGIPEVDL.I..KIKNIIS.ED | |
Retrocopy | LKRRKRIIEHEKQKLKLKKEDNCLHELPEDICMSSA---K*MLSNQKLSGIPEVDLAIYTKIKNIISMED |
Parental | AKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPE-RS |
AKA.LLAE.Q...K....S.VPT..........RFYH.ELN.P....K..P...P..VG..EK.EP...S | |
Retrocopy | AKAHLLAEKQQQQKQ*DVSSVPT--TTDNAAADRFYHKELNVPP*GTK-SPRSCPYGVGNMEKLEPKWPS |
Parental | P-PNRKRPANEKATDDYHYEKFKKMNRRY |
P.P.......EK.T.D.H..KFKKMNR.Y | |
Retrocopy | P<PPNHKLPTEKVTGDHHHKKFKKMNRQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .97 RPM |
SRP017611_liver | 0 .00 RPM | 17 .67 RPM |
SRP040447_lung | 0 .08 RPM | 33 .24 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 22 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020307 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019979 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013895 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000009285 | 1 retrocopy |
retro_cpor_712 ,
|
Equus caballus | ENSECAG00000018958 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013358 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010524 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000009596 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006832 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026851 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009770 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019685 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012313 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020630 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013115 | 1 retrocopy |