Parental gene:

ENSCAFG00000019979

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:9:54009628..54015890(+)


>ENSCAFG00000019979
ATGCCGGTCACCGGCAAGAGTTTCCGCCGGCGCCGGGCCGACTCGGAGTCGGAGGAAGATGAGCAGGACTCAGAGGAGGT
TCGATTAAAACTGGAAGAGACTCGCGAGGTGCAAAACTTGAGGAAGAGGCCCAACGGGGTGAGTGCTGTGGCCCTGCTGG
TAGGAGAGAAGGTACAAGAAGAGACTACCCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGGTATGGTGGACATGAAG
AAACTGAAGGAAAGAGGCAAAGATAAGATCAGTGAAGAGGAAGACCTCCACCTGGGGACGTCATTTTCCGCAGAAACCAA
CAGAAGGGATGAGGATGCCGACATGATGAAGTACATTGAGACAGAGCTGAAAAAGAGGAAAGGGATTGTGGAACATGAAG
AACAGAAAGTCAAGCCAAAGAATGCAGAGGACTGTCTCTACGAACTTCCAGAAAACATCCGTGTTTCCTCAGCAAAGAAG
ACCGAAGAGATGCTTTCCAACCAGATGCTGAGCGGCATCCCCGAGGTGGACCTGGGCATCGATGCTAAAATAAAAAATAT
CATTTCCACGGAGGATGCCAAGGCCCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGTGAGACATCTTTCGTGC
CCACCAACATGGCCGTGAATTATGTGCAGCACAACCGATTTTATCATGAGGAGCTCAATGCCCCCGTACGGAGAAACAAA
GATGAGCCCAAAGCCCGACCCTTGAGAGTGGGTGACACCGAGAAGCCAGAGCCTGAGCGGTCCCCTCCTAACCGCAAGCG
TCCTGCTAATGAGAAGGCCACTGACGACTATCACTATGAGAAGTTCAAGAAGATGAACAGACGG

Library Parental gene expression (RPM)
SRP012049_cerebellum 41 .62 RPM
SRP017611_brain 34 .30 RPM
SRP017611_kidney 40 .55 RPM
SRP017611_liver 15 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020307 ortholog_one2many 1 retrogene
retro_btau_1138,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2many 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Callithrix jacchus ENSCJAG00000020318 possible_ortholog 3 retrogenes
retro_cjac_1757, retro_cjac_2299, retro_cjac_2778,
Cavia porcellus ENSCPOG00000009285 ortholog_one2many 1 retrogene
retro_cpor_712,
Dasypus novemcinctus ENSDNOG00000019214 possible_ortholog 1 retrogene
retro_dnov_1540,
Equus caballus ENSECAG00000018958 ortholog_one2many 1 retrogene
retro_ecab_174,
Homo sapiens ENSG00000136819 possible_ortholog 3 retrogenes
retro_hsap_2872, retro_hsap_2913, retro_hsap_320,
Gorilla gorilla ENSGGOG00000013358 possible_ortholog 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_many2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Microcebus murinus ENSMICG00000009596 ortholog_one2many 1 retrogene
retro_mmur_1466,
Macaca mulatta ENSMMUG00000003795 possible_ortholog 2 retrogenes
retro_mmul_1460, retro_mmul_1870,
Monodelphis domestica ENSMODG00000006832 ortholog_one2many 1 retrogene
retro_mdom_518,
Mus musculus ENSMUSG00000026851 ortholog_one2many 1 retrogene
retro_mmus_2978,
Nomascus leucogenys ENSNLEG00000017658 possible_ortholog 3 retrogenes
retro_nleu_1763, retro_nleu_614, retro_nleu_823,
Otolemur garnettii ENSOGAG00000009770 possible_ortholog 1 retrogene
retro_ogar_1015,
Pongo abelii ENSPPYG00000019685 possible_ortholog 1 retrogene
retro_pabe_2426,
Pan troglodytes ENSPTRG00000021465 possible_ortholog 3 retrogenes
retro_ptro_1943, retro_ptro_1969, retro_ptro_258,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2many 1 retrogene
retro_shar_746,
Ictidomys tridecemlineatus ENSSTOG00000020630 ortholog_one2many 1 retrogene
retro_itri_1783,
Tupaia belangeri ENSTBEG00000013115 ortholog_one2many 1 retrogene
retro_tbel_514,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_116 97.57 100.00
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Download FASTA sequences of all ENSCAFG00000019979 retrocopies