Parental gene:

C9orf78, ENSECAG00000018958

Aliases:None
Description:chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932]
Organism:Horse (Equus caballus)
Coordinates:25:32697931..32704071(-)


>ENSECAG00000018958
ATGCCGGTCACCGGGAAGACTTTCCGCCGGCGCCGCGCCGACTCGGAGTCGGAGGAAGATGAGCAGGACTCAGAGGAGGT
TCGATTAAAACTGGAAGAGACCCGAGAGGTACAGAACTTGAGGAAGAGGCCCAATGGGGTGAGTGCTGTGGCCCTGCTGG
TGGGAGAGAAGGTACAAGAAGAGACTACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGCGGTATGGTGGACATGAAG
AAACTGAAGGAAAGGGGCAAAGATAAGATCAGCGAAGAGGAAGATCTCCACCTGGGGACGTCGTTTTCTGCAGAAACCAA
CCGAAGGGACGAAGATGCTGACATGATGAAGTACATTGAGACAGAGCTGAAGAAGAGGAAAGGGATCGTGGAACATGAGG
AACAGAAAGTCAAGCCGAAGAATGCAGAGGACTGTCTTTACGAACTTCCAGAAAACATCCGCGTTTCCTCAGCAAAGAAG
ACTGAGGAGATGCTTTCCAACCAGATGCTGAGCGGCATCCCCGAGGTGGACCTAGGCATCGATGCCAAAATAAAAAACAT
CATCTCCACGGAGGATGCCAAGGCCCGGCTGCTGGCGGAGCAGCAGAACAAGAAGAAAGACAGTGAGACGTCTTTCGTGC
CCACCAACATGGCCGTCAATTACGTGCAGCACAACCGGTTTTATCATGAGGAGCTCAATGCCCCCATTCGGAGAAACAAA
GAGGAGCCCAAAGCCCGACCCTTGAGAGTGGGTGACACAGAGAAGCCGGAGCCTGAGCGGTCCCCTCCTAACCGCAAGCG
TCCTGCTAATGAGAAGGCCACCGATGATTATCACTATGAGAAGTTCAAGAAGATGAACAGACGGTACTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 22 .14 RPM
SRP021940_cerebellum 34 .79 RPM
SRP021940_embryo 38 .36 RPM
SRP021940_placental_villous 27 .38 RPM
SRP021940_synovial_membrane 26 .88 RPM
SRP021940_testis 51 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020307 ortholog_one2one 1 retrogene
retro_btau_1138,
Canis familiaris ENSCAFG00000019979 ortholog_one2many 1 retrogene
retro_cfam_116,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2one 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Cavia porcellus ENSCPOG00000009285 ortholog_one2one 1 retrogene
retro_cpor_712,
Gorilla gorilla ENSGGOG00000013358 possible_ortholog 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_one2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Microcebus murinus ENSMICG00000009596 ortholog_one2one 1 retrogene
retro_mmur_1466,
Monodelphis domestica ENSMODG00000006832 ortholog_one2one 1 retrogene
retro_mdom_518,
Mus musculus ENSMUSG00000026851 ortholog_one2one 1 retrogene
retro_mmus_2978,
Otolemur garnettii ENSOGAG00000009770 possible_ortholog 1 retrogene
retro_ogar_1015,
Pongo abelii ENSPPYG00000019685 possible_ortholog 1 retrogene
retro_pabe_2426,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2one 1 retrogene
retro_shar_746,
Ictidomys tridecemlineatus ENSSTOG00000020630 ortholog_one2one 1 retrogene
retro_itri_1783,
Tupaia belangeri ENSTBEG00000013115 ortholog_one2one 1 retrogene
retro_tbel_514,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_174 58.66 59.52
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Download FASTA sequences of all ENSECAG00000018958 retrocopies