RetrogeneDB ID: | retro_cpor_747 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_26:21224039..21224322(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5B | ||
Ensembl ID: | ENSCPOG00000005856 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.16 % |
Parental protein coverage: | 52.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LYFANLWSSFCYIEHKVIIVGLDNAG-KTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQE |
..F...W..F.....KVII.GL.NAG.KTTILYQ...NEVVH.SPT.G.NVE..V...T.FLMW.IGGQE | |
Retrocopy | ILFIRIWRLFNCQ*NKVIIAGLNNAG>KTTILYQLPVNEVVHVSPTTGNNVEKTVINYTCFLMWNIGGQE |
Parental | SLRSSWNTYYSNTEFIILVVDSIDR |
.L.S.WNTYY.NTEF.I.VVDSI.R | |
Retrocopy | FLCSFWNTYYINTEFVIVVVDSIGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .67 RPM |
SRP017611_liver | 0 .00 RPM | 2 .61 RPM |
SRP040447_lung | 0 .00 RPM | 0 .88 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005209 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005856 | 2 retrocopies |
retro_cpor_558, retro_cpor_747 ,
|
Macaca mulatta | ENSMMUG00000007453 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014876 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027859 | 1 retrocopy |