RetrogeneDB ID: | retro_cpor_913 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_33:24527120..24527416(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL5A | ||
Ensembl ID: | ENSCPOG00000005209 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64. % |
Parental protein coverage: | 55.31 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | YKRKKFVIVVVDSTDRERISVTREELYKMLAHEDLRK-AGLLIFANKQDVKECMTVAEISQFLKLTSIKD |
Y........VVDSTDR.RISV.RE.L.KM.A.E.LRK..G.L.FANK..V.ECMTVA.ISQFLK.TSIK. | |
Retrocopy | YTNRECAVIVVDSTDRARISVIREKLHKM*ACENLRK<TGSLVFANK*NVGECMTVADISQFLKITSIKG |
Parental | HQWHIQACCALTGEGLCQGLEWMMSRLKIR |
..WH.QAC.ALTG.GLC..LEWM.S...IR | |
Retrocopy | YHWHNQACLALTGKGLCHRLEWMIS*FIIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .86 RPM |
SRP017611_liver | 0 .00 RPM | 4 .27 RPM |
SRP040447_lung | 0 .00 RPM | 8 .50 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 4 .17 RPM |