RetrogeneDB ID: retro_dmel_61

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 3R:3326867..3327965(-)
• Located in intron of: FBgn0015577

Retrocopy information

• Ensembl ID: FBgn0037506
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG2076
• Ensembl ID: FBgn0030263
• Aliases: None
• Description: None

Sequence

>retro_dmel_61
ATGCTTTTGGCCCGTTTAAACCATGTGCTGTCAGGACGACCGATGCGCCTTTTGGGCCAGTCTGGATGTCCTCGCCTGTG
GAGCTCAGCCCATGCGCAGATGAACAGTAATTCCTTAAGAACACCTTCCTTGGCTCAAGGAAAGTCAGTGATTCCTAAAA
GGAATATGCAAGAACTTGGGATGAGAAAGTATTCCAGGGAGTCGAGAGATCGCGATCGTTCCCAACTGGAGAGTCGAACC
AGAGGTCCTTCCCTCAAGGAGCGCATGATGGGACCCCCCAGTGAAAATGCTTACTCCATGGGCAAGGGAGCGGCGGCTGG
AGCGGCTCTGATGGGTCTCGTGGGTCTGTGCTACTATGGTCTGGGCCTTGCCAATCAACCGAGTATCTACGACCACTCGA
TGGTGTGGCCCCAGTACGTGAGGGATCGTATTCATGCCACCTATGCCTATTTCGGAGCATCCTGTGGTGTAACAGCTGCT
TCAGCCGTTGCCTTTTTCCAATCGGATGCCATGATGGCTCTGATGACGCGTTCTGGATGGGTTGCCTCATTGGTTACCCT
GGGACTGGTAATGCTCAGTGGATCCATTGCACAAGGCCTAGAATATCAGCCGGGATTCGGAGCCAAGCAGCTGGCCTGGC
TCGTCCACTGTGCCGTTCTGGGAGCTGTCCTGGCACCCATGTGCCTCCTGGGTGGACCCATTTTGACCAAGGCCCTTTTG
TACACCAGCGGAATCGTGGGTGCCCTGTCCACCGTGGCCGCTTGTGCCCCGAGCGAAAAGTTCCTGCATATGGGCGGACC
GCTGGCCATTGGATTGGGCGTGGTCTTCGCCTCCTCGCTAGCCTCCATGTGGTTGCCGCCCACTACTGCAGTGGGGGCGG
GACTGGCCAGCATGTCGTTGTACGGCGGACTGATTCTGTTCAGCGGATTTCTTCTGTACGATACCCAAAGGATCGTTAAG
TCGGCGGAGTTGTATCCCCAGTACAGTAAATTCCCTTACGATCCAATTAATCATGCCCTGGCCATTTACATGGATGCGCT
CAACATCTTTATCCGCATCGCAATTATATTGGCTGGAGACCAAAAGAGGAAGAACTGA

Alignment

ORF - retro_dmel_61 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.1 %
• Parental protein coverage: 90.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NLNLSTVRTYARRVV-RTREPVEEM-RAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVGLG
          N......R.Y.R....R.R...E...R.PSLKE..MGPPS.NAYSMGKGAAAGAA..GL..LCYYG.GL.
Retrocopy NMQELGMRKYSRESRDRDRSQLESRTRGPSLKERMMGPPSENAYSMGKGAAAGAALMGLVGLCYYGLGLA

Parental  KQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLELASRGGILATIASLALVIGSG
          .Q.SI.D....WPQ.VRDRI..TYA.FG.SC..TAA.A.A.F.S.....L..R.G..A....L.LV..SG
Retrocopy NQPSIYDHSMVWPQYVRDRIHATYAYFGASCGVTAASAVAFFQSDAMMALMTRSGWVASLVTLGLVMLSG

Parental  AVARSIEYQPGLGAKHLAWAVHCAILGAVIAPICFMGGPILTRAALYTGGIVGGLSTIAACAPSDKFLYM
          ..A...EYQPG.GAK.LAW.VHCA.LGAV.AP.C..GGPILT.A.LYT.GIVG.LST.AACAPS.KFL.M
Retrocopy SIAQGLEYQPGFGAKQLAWLVHCAVLGAVLAPMCLLGGPILTKALLYTSGIVGALSTVAACAPSEKFLHM

Parental  GGPLAIGLGVVFASSLASMWLPPTTALGAGLASMSLYGGLVLFSGFLLYDTQRMVRRAEVYPQYSYTPYD
          GGPLAIGLGVVFASSLASMWLPPTTA.GAGLASMSLYGGL.LFSGFLLYDTQR.V..AE.YPQYS..PYD
Retrocopy GGPLAIGLGVVFASSLASMWLPPTTAVGAGLASMSLYGGLILFSGFLLYDTQRIVKSAELYPQYSKFPYD

Parental  PINASMSIYMDVLNIFIRIVTILSGGQRRK
          PIN....IYMD.LNIFIRI..IL.G.Q.RK
Retrocopy PINHALAIYMDALNIFIRIAIILAGDQKRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_61 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_61 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 18 parental genes, and 28 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009753	1 retrocopy	retro_amel_336,
Bos taurus	ENSBTAG00000032829	2 retrocopies	retro_btau_1689, retro_btau_779,
Choloepus hoffmanni	ENSCHOG00000001576	1 retrocopy	retro_chof_5,
Cavia porcellus	ENSCPOG00000006432	1 retrocopy	retro_cpor_1436,
Dasypus novemcinctus	ENSDNOG00000018880	5 retrocopies	retro_dnov_2426, retro_dnov_2514, retro_dnov_2524, retro_dnov_708, retro_dnov_812,
Dipodomys ordii	ENSDORG00000001109	1 retrocopy	retro_dord_184,
Echinops telfairi	ENSETEG00000001796	1 retrocopy	retro_etel_68,
Loxodonta africana	ENSLAFG00000009646	1 retrocopy	retro_lafr_388,
Macropus eugenii	ENSMEUG00000009861	3 retrocopies	retro_meug_1431, retro_meug_1806, retro_meug_798,
Microcebus murinus	ENSMICG00000011621	1 retrocopy	retro_mmur_692,
Monodelphis domestica	ENSMODG00000001693	3 retrocopies	retro_mdom_1008, retro_mdom_407, retro_mdom_886,
Oryctolagus cuniculus	ENSOCUG00000006093	1 retrocopy	retro_ocun_260,
Otolemur garnettii	ENSOGAG00000012120	1 retrocopy	retro_ogar_1287,
Rattus norvegicus	ENSRNOG00000013961	1 retrocopy	retro_rnor_2461,
Sus scrofa	ENSSSCG00000010345	1 retrocopy	retro_sscr_1102,
Tupaia belangeri	ENSTBEG00000016365	2 retrocopies	retro_tbel_1601, retro_tbel_2819,
Tarsius syrichta	ENSTSYG00000006367	1 retrocopy	retro_tsyr_4,
Drosophila melanogaster	FBgn0030263	1 retrocopy	retro_dmel_61 ,