RetrogeneDB ID: | retro_dmel_80 | ||
Retrocopylocation | Organism: | Fruit fly (Drosophila melanogaster) | |
Coordinates: | 2R:12661924..12663055(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | FBgn0011743 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Arp87C | ||
Ensembl ID: | FBgn0011745 | ||
Aliases: | None | ||
Description: | Actin-related protein 87C [Source:FlyBase gene name;Acc:FBgn0011745] |
Percent Identity: | 51.78 % |
Parental protein coverage: | 97.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRYPMEHGIVT |
VVIDNGSGV.KAGF..E..P...FP...GRP.H..V......GD...G..A...RG.L...YP.EHG.V. | |
Retrocopy | VVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAARKRGILTLKYPIEHGMVK |
Parental | DWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYATG |
.W..ME..W...Y..E.L.....D.P.LLTEAPLNP..NREK..E..FE....PA..V..QAVLSLYATG | |
Retrocopy | NWDEMEMVWQHTY--ELLRADPMDLPALLTEAPLNPKKNREKMTEIMFEHFQVPAFYVAVQAVLSLYATG |
Parental | RVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFRSTAEFEIVRSIKEKV |
R..G.V.DSGDGVTH.VPIYEGFA.PH...RVD.AGRD.T.YL..L....G......AE.EIVR.IKEK. | |
Retrocopy | RTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLERGVTMGTSAEREIVREIKEKL |
Parental | CYLATNPQKEETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLR |
CY...N..KE.........Y.LPDG.....G..RFR.PE.LF.P.LLG.E..GIH.....SI...DMDLR | |
Retrocopy | CYVSMNYAKEMDLHGKVETYELPDGQKIVLGCERFRCPEALFQPSLLGQEVMGIHEATHHSITNCDMDLR |
Parental | KMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKR |
K..Y.NIVLSGG.T.F.....R.L..L.........I...A...R..S.W.GGS.LASL..F..MWI... | |
Retrocopy | KDMYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIRIKVNASPDRRFSVWTGGSVLASLTSFQNMWIDSL |
Parental | EYEEEGQKAVHRKTF |
EYEE.G...VHRK.F | |
Retrocopy | EYEEVGSAIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000138107 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025228 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015157 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002605 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002894 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007116 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000406 | 1 retrocopy | |
Drosophila melanogaster | FBgn0011745 | 1 retrocopy |
retro_dmel_80 ,
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