RetrogeneDB ID:

retro_dmel_80

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:2R:12661924..12663055(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0011743
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Arp87C
Ensembl ID:FBgn0011745
Aliases:None
Description:Actin-related protein 87C [Source:FlyBase gene name;Acc:FBgn0011745]


Retrocopy-Parental alignment summary:






>retro_dmel_80
ATGAGCAGCGAGGTAGATAGTAATTCACACCACGCCGCAGTGGTTATTGACAACGGCTCTGGAGTATGTAAGGCTGGATT
CTCCCCAGAAGATACTCCCCGTGCTGTCTTCCCGTCGATTGTGGGCAGACCTCGTCACCTGAACGTCCTGCTGGATTCCG
TGATCGGTGATAGTGTTATTGGCGAGGCGGCAGCCCGAAAAAGGGGAATACTAACCCTAAAGTATCCCATCGAGCACGGA
ATGGTCAAGAACTGGGATGAAATGGAGATGGTTTGGCAGCACACGTACGAGCTCTTGCGGGCGGATCCAATGGATTTGCC
GGCTCTACTCACCGAAGCCCCACTGAATCCGAAGAAGAATAGAGAGAAGATGACAGAGATTATGTTCGAACACTTTCAGG
TGCCAGCTTTTTATGTAGCAGTTCAGGCTGTGCTCTCACTTTACGCCACCGGGCGTACTGTGGGCATTGTGGTGGACTCG
GGTGATGGTGTGACGCACACGGTACCGATCTACGAAGGATTTGCCCTGCCCCACGCCTGTGTACGAGTTGATCTGGCCGG
CAGGGACCTCACCGATTATCTATGCAAGCTGCTTCTGGAGAGGGGCGTTACAATGGGCACCTCTGCTGAACGGGAAATCG
TGCGTGAAATCAAGGAGAAACTCTGCTATGTGTCAATGAACTATGCCAAGGAAATGGATCTCCACGGAAAGGTGGAAACC
TATGAGCTGCCAGATGGGCAGAAAATCGTTTTGGGCTGCGAGAGATTCCGCTGCCCGGAGGCTCTCTTCCAACCCAGTTT
GCTGGGTCAGGAGGTGATGGGCATCCACGAGGCCACCCATCACTCGATAACCAACTGCGACATGGATCTGCGAAAGGATA
TGTATGCGAACATTGTTCTCTCTGGCGGTACGACCATGTTTCGTAACATCGAGCATAGATTCCTGCAAGACCTAACCGAA
ATGGCTCCACCATCCATCCGAATCAAGGTTAACGCTAGTCCAGACCGCAGATTCTCCGTTTGGACGGGTGGTTCCGTCTT
GGCCTCACTCACGAGCTTCCAAAACATGTGGATCGACAGCTTGGAGTACGAAGAAGTTGGTTCCGCCATAGTCCATCGAA
AGTGTTTTTAG

ORF - retro_dmel_80 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 51.78 %
Parental protein coverage: 97.07 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAGALEGDIFVGPKAEEHRGLLSIRYPMEHGIVT
VVIDNGSGV.KAGF..E..P...FP...GRP.H..V......GD...G..A...RG.L...YP.EHG.V.
RetrocopyVVIDNGSGVCKAGFSPEDTPRAVFPSIVGRPRHLNVLLDSVIGDSVIGEAAARKRGILTLKYPIEHGMVK
ParentalDWNDMERIWSYIYSKEQLATFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYATG
.W..ME..W...Y..E.L.....D.P.LLTEAPLNP..NREK..E..FE....PA..V..QAVLSLYATG
RetrocopyNWDEMEMVWQHTY--ELLRADPMDLPALLTEAPLNPKKNREKMTEIMFEHFQVPAFYVAVQAVLSLYATG
ParentalRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRREGFNFRSTAEFEIVRSIKEKV
R..G.V.DSGDGVTH.VPIYEGFA.PH...RVD.AGRD.T.YL..L....G......AE.EIVR.IKEK.
RetrocopyRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRDLTDYLCKLLLERGVTMGTSAEREIVREIKEKL
ParentalCYLATNPQKEETVETEKFAYKLPDGKIFEIGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLR
CY...N..KE.........Y.LPDG.....G..RFR.PE.LF.P.LLG.E..GIH.....SI...DMDLR
RetrocopyCYVSMNYAKEMDLHGKVETYELPDGQKIVLGCERFRCPEALFQPSLLGQEVMGIHEATHHSITNCDMDLR
ParentalKMLYQNIVLSGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASLDTFKKMWISKR
K..Y.NIVLSGG.T.F.....R.L..L.........I...A...R..S.W.GGS.LASL..F..MWI...
RetrocopyKDMYANIVLSGGTTMFRNIEHRFLQDLTEMAPPSIRIKVNASPDRRFSVWTGGSVLASLTSFQNMWIDSL
ParentalEYEEEGQKAVHRKTF
EYEE.G...VHRK.F
RetrocopyEYEEVGSAIVHRKCF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
3 EST(s) were mapped to retro_dmel_80 retrocopy
EST ID Start End Identity Match Mis-match Score
BF490336 12661946 12662383 99.8 435 1 433
CO182181 12662234 12662444 100 210 0 210
EY198943 12661810 12662395 100 532 0 531
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_80 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001381071 retrocopy
Mus musculus ENSMUSG000000252281 retrocopy
Nomascus leucogenys ENSNLEG000000151571 retrocopy
Pongo abelii ENSPPYG000000026051 retrocopy
Pan troglodytes ENSPTRG000000028941 retrocopy
Pteropus vampyrus ENSPVAG000000071161 retrocopy
Tarsius syrichta ENSTSYG000000004061 retrocopy
Drosophila melanogaster FBgn0011745 1 retrocopy
retro_dmel_80 ,



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