RetrogeneDB ID: | retro_dnov_1121 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_150304:3789..4522(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MFSD1 | ||
Ensembl ID: | ENSDNOG00000005048 | ||
Aliases: | None | ||
Description: | major facilitator superfamily domain containing 1 [Source:HGNC Symbol;Acc:25874] |
Percent Identity: | 94.69 % |
Parental protein coverage: | 52.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IGGESLAVAQNTYAVSWFKGKELNLVFGLQLSMARIGSTVNMNLMGWLYSKIEASLGSAGH-TTLGVTLM |
IGGESLAVAQNTYAVSWFKGKELNLVF.LQL.MARIGSTVNMNLMGW.YSKIEASLGSAGH.TTLGVTLM | |
Retrocopy | IGGESLAVAQNTYAVSWFKGKELNLVFELQLTMARIGSTVNMNLMGWQYSKIEASLGSAGH>TTLGVTLM |
Parental | IGGITCILSLISALALAYLDQRAERILHKEQGKTGEVIKLTDVKDFSLSLWLIFIICVCYYVVVFPFIGL |
I.GITCILSLISALALAYLDQRAERILHKEQGKTGEVIKLTDVKDFSLSLWLIFIIC.CYYVVVFPFIGL | |
Retrocopy | IRGITCILSLISALALAYLDQRAERILHKEQGKTGEVIKLTDVKDFSLSLWLIFIICACYYVVVFPFIGL |
Parental | GKVFFTEKFGFSSQAASAINSVVYVISAPMSPIFGILVDKTGRNIIWVLCAVATTLASHMMLAFTLWNPW |
GKVFFTEK.GFSSQAASAINS.VYVISAPMSPIFGILVDKTGRNIIWVLC.VATTLASHMMLAFTLWNPW | |
Retrocopy | GKVFFTEKVGFSSQAASAINSLVYVISAPMSPIFGILVDKTGRNIIWVLCVVATTLASHMMLAFTLWNPW |
Parental | IAMCLLRLSYSLLACALWPMMAFVVPEHQLRTAYG |
IAMCLL.LSYSLLACALWPM.AFVVPEHQL..AYG | |
Retrocopy | IAMCLLGLSYSLLACALWPMVAFVVPEHQLGIAYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 12 .83 RPM | 19 .45 RPM |
SRP012922_cerebellum | 5 .64 RPM | 10 .04 RPM |
SRP012922_heart | 6 .96 RPM | 11 .60 RPM |
SRP012922_kidney | 17 .52 RPM | 28 .47 RPM |
SRP012922_liver | 8 .98 RPM | 11 .15 RPM |
SRP012922_lung | 19 .70 RPM | 20 .92 RPM |
SRP012922_quadricep_muscle | 8 .65 RPM | 7 .27 RPM |
SRP012922_spleen | 18 .20 RPM | 30 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009263 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005048 | 1 retrocopy |
retro_dnov_1121 ,
|
Macaca mulatta | ENSMMUG00000023510 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001272 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014247 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013974 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002207 | 2 retrocopies | |
Drosophila melanogaster | FBgn0031636 | 1 retrocopy |