RetrogeneDB ID: | retro_dnov_1168 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_157657:684..1410(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZB | ||
Ensembl ID: | ENSDNOG00000018644 | ||
Aliases: | None | ||
Description: | capping protein (actin filament) muscle Z-line, beta [Source:HGNC Symbol;Acc:1491] |
Percent Identity: | 91.74 % |
Parental protein coverage: | 90.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSY |
SDQQLDCAL.LMRRLPPQQIEKNLSDLIDLVPSLCEDLL.SVDQPLKIARDKV.GKDYLLCDYNRDGDSY | |
Retrocopy | SDQQLDCALYLMRRLPPQQIEKNLSDLIDLVPSLCEDLLFSVDQPLKIARDKVLGKDYLLCDYNRDGDSY |
Parental | RSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGS |
RSPWSNKY.PPLEDGAMPSA.L.KLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGV.LIKKAGD.S | |
Retrocopy | RSPWSNKYNPPLEDGAMPSAQL*KLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVTLIKKAGDAS |
Parental | KKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQMEKDEGVNDSSPHIA |
KKI.G.WDSIHVVEVQEKSSGRTAH.KLTS.VMLWLQTNKS.SGT.NLGGSLTRQMEKDE.V.DSSPHIA | |
Retrocopy | KKI*GYWDSIHVVEVQEKSSGRTAHFKLTSMVMLWLQTNKSSSGTINLGGSLTRQMEKDETVSDSSPHIA |
Parental | HIGRLVEDMENKIRSTLNEIYFGKTKGIVNGL |
.IGRL.EDMENKIRSTLNEIYFGKTK..VNGL | |
Retrocopy | NIGRLAEDMENKIRSTLNEIYFGKTKDVVNGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 26 .45 RPM | 80 .70 RPM |
SRP012922_cerebellum | 11 .82 RPM | 51 .14 RPM |
SRP012922_heart | 8 .59 RPM | 34 .57 RPM |
SRP012922_kidney | 10 .40 RPM | 36 .69 RPM |
SRP012922_liver | 6 .66 RPM | 27 .71 RPM |
SRP012922_lung | 18 .94 RPM | 65 .82 RPM |
SRP012922_quadricep_muscle | 11 .25 RPM | 61 .79 RPM |
SRP012922_spleen | 22 .89 RPM | 97 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006715 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018644 | 3 retrocopies |
retro_dnov_1168 , retro_dnov_1719, retro_dnov_2663,
|
Macropus eugenii | ENSMEUG00000002018 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012115 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014711 | 1 retrocopy |