RetrogeneDB ID: | retro_meug_1958 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold74525:8552..9014(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZB | ||
Ensembl ID: | ENSMEUG00000002018 | ||
Aliases: | None | ||
Description: | capping protein (actin filament) muscle Z-line, beta [Source:HGNC Symbol;Acc:1491] |
Percent Identity: | 90.26 % |
Parental protein coverage: | 54.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR |
.QQL.CALD.MRRLPPQQ.EKNLSDLI.LVPSLCEDLLSSVDQPL..ARDKVVGKDYLLCDYNRDGDSYR | |
Retrocopy | NQQLVCALDIMRRLPPQQMEKNLSDLINLVPSLCEDLLSSVDQPLNTARDKVVGKDYLLCDYNRDGDSYR |
Parental | SPWSNRYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSK |
SPWSNRYDPPLEDG..PSARLRKLE.EAN.AFDQYR.LYFEGGVSSVYLWDLDHGFAG.ILIKKAG.GSK | |
Retrocopy | SPWSNRYDPPLEDGVKPSARLRKLEIEANHAFDQYRALYFEGGVSSVYLWDLDHGFAGAILIKKAGHGSK |
Parental | KIKGCWDSIHVVEV |
.IKGCWDSIHVVEV | |
Retrocopy | TIKGCWDSIHVVEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006715 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018644 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000002018 | 1 retrocopy |
retro_meug_1958 ,
|
Myotis lucifugus | ENSMLUG00000012115 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014711 | 1 retrocopy |