RetrogeneDB ID: | retro_dnov_1316 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_18076:7853..8111(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000018469 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKRKAEGDVKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPA |
MPKRKAEGDVKGDKAK....PQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPA | |
Retrocopy | MPKRKAEGDVKGDKAK----PQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPA |
Parental | ENGDAKTDQAQKAEGAGDAK |
ENGDAKTDQAQKAEGA.DAK | |
Retrocopy | ENGDAKTDQAQKAEGAADAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 5 .06 RPM | 171 .91 RPM |
SRP012922_cerebellum | 0 .69 RPM | 56 .64 RPM |
SRP012922_heart | 0 .93 RPM | 37 .82 RPM |
SRP012922_kidney | 0 .27 RPM | 69 .27 RPM |
SRP012922_liver | 0 .31 RPM | 25 .23 RPM |
SRP012922_lung | 2 .14 RPM | 112 .56 RPM |
SRP012922_quadricep_muscle | 0 .35 RPM | 29 .94 RPM |
SRP012922_spleen | 5 .95 RPM | 232 .70 RPM |