RetrogeneDB ID: | retro_dnov_2254 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_59196:5000..5275(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000018469 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MPKRKAEGDVKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKA-PAK--KGEKVPKG-KKGKADAGKDG |
MPKRKAEGD.K.DKAKVKD.P.R.SAR.SAKPAPPKP.PK..K..P.K.......PKG.K.G.AD.GK.. | |
Retrocopy | MPKRKAEGDIKRDKAKVKDKP*RISAR*SAKPAPPKPQPKSTKT<PCKERREDRYPKG<KSGNADTGKSE |
Parental | NNPAENGD-AKTDQAQKAEGAGDAK |
NNP.ENGD.AKTD.A.KAE.AGDAK | |
Retrocopy | NNPEENGD>AKTDEAWKAEDAGDAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 171 .91 RPM |
SRP012922_cerebellum | 0 .00 RPM | 56 .64 RPM |
SRP012922_heart | 0 .00 RPM | 37 .82 RPM |
SRP012922_kidney | 0 .00 RPM | 69 .27 RPM |
SRP012922_liver | 0 .00 RPM | 25 .23 RPM |
SRP012922_lung | 0 .00 RPM | 112 .56 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 29 .94 RPM |
SRP012922_spleen | 0 .00 RPM | 232 .70 RPM |