RetrogeneDB ID: | retro_dnov_2596 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_8906:1019..1248(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000018469 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.51 % |
Parental protein coverage: | 87.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GDVKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKV-PKGKKGKADAG-KDGNNPAENGDA |
G..KGDKAK.KD.PQR.SARLS.K.APP.PEPK..K...KKGEK..PKGKKG..D.G.KDGN.P.EN.DA | |
Retrocopy | GNAKGDKAKGKDQPQR-SARLSSKAAPPRPEPKATKE--KKGEKE>PKGKKGNSDVG>KDGNGPEENRDA |
Parental | K-TDQAQKAEGA |
K.TDQ.QK.EGA | |
Retrocopy | K<TDQVQKTEGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 171 .91 RPM |
SRP012922_cerebellum | 0 .00 RPM | 56 .64 RPM |
SRP012922_heart | 0 .00 RPM | 37 .82 RPM |
SRP012922_kidney | 0 .00 RPM | 69 .27 RPM |
SRP012922_liver | 0 .00 RPM | 25 .23 RPM |
SRP012922_lung | 0 .00 RPM | 112 .56 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 29 .94 RPM |
SRP012922_spleen | 0 .00 RPM | 232 .70 RPM |