RetrogeneDB ID: | retro_dnov_1536 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_22904:32969..33296(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYB | ||
Ensembl ID: | ENSDNOG00000009984 | ||
Aliases: | None | ||
Description: | nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805] |
Percent Identity: | 69.37 % |
Parental protein coverage: | 53.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EFISFITSEAS-ERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM---KGEKGIGGTVTA |
EF.SFITSEA..E.CHQ.K.KTI.G.DILF.MS.L.F.SYVEPLKLYLQKFREAM...K........VTA | |
Retrocopy | EFFSFITSEAM<E*CHQAKQKTITGGDILFVMSILSFESYVEPLKLYLQKFREAMKGEKXXXXXXXXVTA |
Parental | TDGLSEELTEEA-FTNQLPAGLITADGQQQNVMVYTTSYQQ |
TDGLSEE.TEE..FTNQLPA.LIT.D.QQQ.V..YT.S.QQ | |
Retrocopy | TDGLSEEFTEEE>FTNQLPAVLITSDDQQQKVKFYTMS*QQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 9 .33 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .05 RPM |
SRP012922_heart | 0 .00 RPM | 3 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 5 .20 RPM |
SRP012922_liver | 0 .00 RPM | 34 .99 RPM |
SRP012922_lung | 0 .00 RPM | 12 .37 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 5 .88 RPM |
SRP012922_spleen | 0 .00 RPM | 14 .65 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014610 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003213 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009984 | 3 retrocopies |
retro_dnov_1536 , retro_dnov_758, retro_dnov_855,
|
Felis catus | ENSFCAG00000026471 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005468 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008117 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004892 | 3 retrocopies |