RetrogeneDB ID: | retro_pabe_3319 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:40441409..40441803(-) | ||
Located in intron of: | ENSPPYG00000018538 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFYB | ||
Ensembl ID: | ENSPPYG00000004892 | ||
Aliases: | None | ||
Description: | nuclear transcription factor Y, beta [Source:HGNC Symbol;Acc:7805] |
Percent Identity: | 67.39 % |
Parental protein coverage: | 65.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK-TINGE |
SKES.REQ.I...IA.V.RIMK.AI.Q.G.....A.E.V.ECV..FISFIT.EASERC.QEK.K....GE | |
Retrocopy | SKESCREQNIHFLIAHVTRIMKHAISQMG----NAQESVKECVRVFISFITPEASERCLQEKWK<MASGE |
Parental | DILFAMSTLGFDSYVEPLKLYL-QKFREAMKGEKGIGGAVTATDGLSEELTEEAFTNQLPAGLITTDG |
D.LFAMST.GFDSYVEPLKL.L.QK.R...KGEKGIGG.V.ATDGLSEELTE.AF..Q.PAG.I...G | |
Retrocopy | DLLFAMSTIGFDSYVEPLKLSL<QKLRKSVKGEKGIGGEVRATDGLSEELTE*AFASQSPAGFIPAAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .23 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .66 RPM |
SRP007412_heart | 0 .00 RPM | 9 .12 RPM |
SRP007412_kidney | 0 .03 RPM | 12 .93 RPM |
SRP007412_liver | 0 .00 RPM | 7 .68 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014610 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003213 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009984 | 3 retrocopies | |
Felis catus | ENSFCAG00000026471 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005468 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008117 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004892 | 3 retrocopies |
retro_pabe_2201, retro_pabe_2803, retro_pabe_3319 ,
|