RetrogeneDB ID: retro_dnov_1548

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_23283:15148..15381(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNASEK
• Ensembl ID: ENSDNOG00000023883
• Aliases: None
• Description: ribonuclease, RNase K [Source:HGNC Symbol;Acc:33911]

Sequence

>retro_dnov_1548
ATGGCGGCGCTCCTGTGCTGTGGGCCCAAGCTGGCCGCCTGCGGCCTCGTCCTCAGCGTTTGGGGGGTGATCATGTTGAT
CATGCTTGGGATCTTTTCAATGTTCATTCCGCTGTGTTAATTGAGGATGTTCCCTTCACAGAGCAGGATTTTGTGAATGG
CCCCAATGACATATACGACCTTTACCCACAAGTCAACTACAACTGTTTCATCGCCGCGGGCCTTTACCTAATC

Alignment

ORF - retro_dnov_1548 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.14 %
• Parental protein coverage: 79.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MASLLCCGPKLAACGIVLSVWGVIMLIMLGIF-FNVHSAVLIEDVPFTEQDFENGPNDIYKLYEQVSYNC
          MA.LLCCGPKLAACG.VLSVWGVIMLIMLGIF.FNVHSAVLIEDVPFTEQDF.NGPNDIY.LY.QV.YNC
Retrocopy MAALLCCGPKLAACGLVLSVWGVIMLIMLGIF<FNVHSAVLIEDVPFTEQDFVNGPNDIYDLYPQVNYNC

Parental  FIAAGLYLI
          FIAAGLYLI
Retrocopy FIAAGLYLI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.00 RPM	0.00 RPM
SRP012922_cerebellum	0.00 RPM	0.00 RPM
SRP012922_heart	0.00 RPM	0.00 RPM
SRP012922_kidney	0.00 RPM	0.00 RPM
SRP012922_liver	0.00 RPM	0.00 RPM
SRP012922_lung	0.00 RPM	0.00 RPM
SRP012922_quadricep_muscle	0.00 RPM	0.00 RPM
SRP012922_spleen	0.00 RPM	0.00 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_1548 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000004064	1 retrocopy	retro_cpor_641,
Dasypus novemcinctus	ENSDNOG00000023883	1 retrocopy	retro_dnov_1548 ,
Tarsius syrichta	ENSTSYG00000006902	2 retrocopies	retro_tsyr_1104, retro_tsyr_1737,