RetrogeneDB ID: | retro_dnov_1638 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_25179:38689..38996(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DYNLT3 | ||
| Ensembl ID: | ENSDNOG00000014826 | ||
| Aliases: | None | ||
| Description: | dynein, light chain, Tctex-type 3 [Source:HGNC Symbol;Acc:11694] |
Retrocopy-Parental alignment summary:
>retro_dnov_1638
ATGGAAGAGGATCGTTGCCACTCCAAATGAGGCTGGCTTCAAAGCTGACAAAGCTCACAATATTGTTAAAGAGTGTGTAG
ATGAGGTCTTGGATGGTGAAGATCATAATCAAATCAATATCAACCAGTGGACTGCAAGAGTGGAACAATCCTTAACCCAT
TTGGCTAAGTTGGGAAAAGCTTATAAATACACTGTGACCTGTGCAGTGGTGGAGAGGAGTGTACGTGGCTTTCATACCAC
TAGGTCATGTTTTTGGGATACCACACCTGATGGAACCTGTACTGCAAGGGAGAACCGAACCATGAAC
ORF - retro_dnov_1638 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.14 % |
| Parental protein coverage: | 93.69 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MEEYHRHC-DEVGFNADEAHNIVKECVDEVLGGEDYNQNNINQWTARIVGQSLTHLVKLGKAYKYIVTCA |
| MEE...H...E.GF.AD.AHNIVKECVDEVL.GED.NQ.NINQWTAR.V.QSLTHL.KLGKAYKY.VTCA | |
| Retrocopy | MEEDRCHS>NEAGFKADKAHNIVKECVDEVLDGEDHNQININQWTAR-VEQSLTHLAKLGKAYKYTVTCA |
| Parental | VVQRSAYGFHTASSCFWDTTSDGTCTVRWENRTMN |
| VV.RS..GFHT..SCFWDTT.DGTCT.R.ENRTMN | |
| Retrocopy | VVERSVRGFHTTRSCFWDTTPDGTCTAR-ENRTMN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .39 RPM | 3 .31 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 8 .94 RPM |
| SRP012922_heart | 0 .00 RPM | 5 .10 RPM |
| SRP012922_kidney | 0 .00 RPM | 1 .37 RPM |
| SRP012922_liver | 0 .00 RPM | 2 .63 RPM |
| SRP012922_lung | 0 .00 RPM | 6 .26 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 0 .69 RPM |
| SRP012922_spleen | 0 .23 RPM | 9 .16 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1638 was not experimentally validated.