>retro_dnov_2085
GTGAGTGTGGTGGAGGCGCTGCAGCAGTTCTGGCAGATGAAGCAGTCCCTTGGGGCTGACTTGAAGAATGGGGCTTTAGC
GGTTTTGAGATGGTGCCTACCAACAGCCCTCTCTATGTCTGCTATGTCACCCTGCCGGGGGGAAGTTGCTTTGGGAGTTT
CCAGGTTTGTCCCACAAAAGCTGAGGCTCGGCGGAGTGCTGCAAAGATTGCACTAATGAACTCTGTGTTTAATGCACATC
CTTCCCGGAGAATCACTGATGAGTTCATTGAGAAGAGTGTCTCTGAGCCTTTGGCATCTTTCAGCGGCAACAGGGAGGAG
GCTGACAACCCAAATACAGGGACTGGTGCCTTCGGATTCATGTTGGAACCCAACAAGGGCAAGTCAGTGTTGGAGTTCCA
GGAGTTAATGACAGTTTTTCAACTGCTGCACTGGAATGGCAGCCTTCAGGCCATGAGGGAAAGACCGAGCTCTCAGCAAG
AGGTGCTGGCTCATTATTCACCCCCAGCCCTGGATGATGATATTCGCCACCAAATGGCATTGCACTGGGTGAGCCGGGAG
AGAGTGTGCCAGGGGCACTGTCTAGAGAGCTGGCCTCCACTGAGTGGGAGCTGGATGAAGCCTGGCTGGGAGGCAAGTTG
CTGTGCTTCCACAAGGAGAAGAAAGATATTCTCATGCTGGCTGCTGGGCAGTTGGGCAAC
ORF - retro_dnov_2085 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
51.27 % |
Parental protein coverage: |
82.92 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | LNVVSMLQEFWESKQQQRAAFPSEGIVV-YESLPSPGPPFVSYVTLPGGSCFGNFQCCLSRAEARRDAAK |
| ..VV..LQ.FW..KQ...A........V..E..P...P..V.YVTLPGGSCFG.FQ.C...AEARR.AAK |
Retrocopy | VSVVEALQQFWQMKQSLGADLKNGALAV<FEMVPTNSPLYVCYVTLPGGSCFGSFQVCPTKAEARRSAAK |
|
Parental | VALINSLFNELPSRRITKEFIMESVQEAVASTSGTLDDADDPSTSIGAYHYMLESNMGKTMLEFQELMTI |
| .AL.NS.FN..PSRRIT.EFI..SV.E..AS.SG....AD.P.T..GA...MLE.N.GK..LEFQELMT. |
Retrocopy | IALMNSVFNAHPSRRITDEFIEKSVSEPLASFSGNREEADNPNTGTGAFGFMLEPNKGKSVLEFQELMTV |
|
Parental | FQLLHWNGSLKALRETKCSRQXXXXXXXXXXXXXXXXXXMALDWIMKR-ES-PGILSQELRMVLRELEEA |
| FQLLHWNGSL.A.RE...S.Q..................MAL.W.....ES.PG.LS.EL.....EL.EA |
Retrocopy | FQLLHWNGSLQAMRERPSSQQEVLAHYSPPALDDDIRHQMALHWVSRE<ESVPGALSRELASTEWELDEA |
|
Parental | RKAGQELRFYKEKKEIVSLALTQIYN |
| ...G..L.F.KEKK.I..LA..Q..N |
Retrocopy | WLGGKLLCFHKEKKDILMLAAGQLGN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
1 .17 RPM |
0 .78 RPM |
SRP012922_cerebellum |
1 .37 RPM |
1 .92 RPM |
SRP012922_heart |
2 .09 RPM |
0 .00 RPM |
SRP012922_kidney |
0 .82 RPM |
0 .00 RPM |
SRP012922_liver |
2 .01 RPM |
0 .00 RPM |
SRP012922_lung |
3 .82 RPM |
0 .00 RPM |
SRP012922_quadricep_muscle |
0 .69 RPM |
0 .17 RPM |
SRP012922_spleen |
4 .92 RPM |
0 .00 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_2085 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.