RetrogeneDB ID: | retro_dnov_2448 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_7580:25240..25525(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATXN7L3 | ||
Ensembl ID: | ENSDNOG00000003379 | ||
Aliases: | None | ||
Description: | ataxin 7-like 3 [Source:HGNC Symbol;Acc:25416] |
Percent Identity: | 69.7 % |
Parental protein coverage: | 52.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | NSSRIA-NRRIANSNNMNKSESDQEDNDDINDNDWSYGS-EKKAKKRKS-DKNPNSPRRSKSLKHKNGEL |
NSS.IA.....A.SN.M..SESDQED..DIN.ND.S.G..EKKA.KRK..DK.P.SP.RSKS.KHKN.EL | |
Retrocopy | NSSLIA<SLHVASSNSMSDSESDQEDDCDINGNDCSCGL<EKKARKRKL<DKSPHSP*RSKSPKHKNREL |
Parental | SNSDPFKYNNSTGISYETLGPEELRSLLT |
SNS.PFK.NNSTG.SY.TLGPEEL.SLLT | |
Retrocopy | SNSVPFKPNNSTGMSYKTLGPEEL*SLLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .22 RPM |
SRP012922_cerebellum | 0 .00 RPM | 10 .59 RPM |
SRP012922_heart | 0 .00 RPM | 2 .32 RPM |
SRP012922_kidney | 0 .00 RPM | 2 .46 RPM |
SRP012922_liver | 0 .00 RPM | 3 .41 RPM |
SRP012922_lung | 0 .00 RPM | 5 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .21 RPM |
SRP012922_spleen | 0 .00 RPM | 4 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003379 | 13 retrocopies | |
Homo sapiens | ENSG00000087152 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010959 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029935 | 1 retrocopy |